mRNA_H-elongata_contig12510.1888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12510.1888.1
Unique NamemRNA_H-elongata_contig12510.1888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12510.1888.1 vs. uniprot
Match: D7G0I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.360e-13
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 QAGYEELINLHGIGFHRAQRILETSHVFCGRSVTPFKGLADLSRIGMFPKEIEKMGKNNMFECLDV 198
            QA   EL +LHGIG  RAQ IL+T      R+  PF+ LADLSRIGM+PK+IEKMG++NM ECLDV
Sbjct:  289 QASSAELTDLHGIGPRRAQLILQT------RAAAPFETLADLSRIGMYPKQIEKMGRHNMLECLDV 348
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BLAST of mRNA_H-elongata_contig12510.1888.1 vs. uniprot
Match: A0A6H5JWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.020e-13
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 QAGYEELINLHGIGFHRAQRILETSHVFCGRSVTPFKGLADLSRIGMFPKEIEKMGKNNMFECLDV 198
            QA   EL +LHGIG  RAQ IL+T      R+  PF+ LADLSRIGM+PK+IEKMG++NM ECLDV
Sbjct:  356 QASSAELTDLHGIGPRRAQLILQT------RAAAPFETLADLSRIGMYPKQIEKMGRHNMLECLDV 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12510.1888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0I4_ECTSI4.360e-1362.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWP7_9PHAE6.020e-1362.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12510contigH-elongata_contig12510:2066..3367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRuvA domain 2-like
Ec32 orthologEc-20_002440.1
Exons2
Model size909
Cds size228
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12510.1888.1prot_H-elongata_contig12510.1888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12510 2066..2686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.6389563-CDS-H-elongata_contig12510:2065..21391622929738.6389563-CDS-H-elongata_contig12510:2065..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12510 2066..2139 +
1691679138.9440062-CDS-H-elongata_contig12510:2065..21391691679138.9440062-CDS-H-elongata_contig12510:2065..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12510 2066..2139 +
1622929738.6532664-CDS-H-elongata_contig12510:2532..26861622929738.6532664-CDS-H-elongata_contig12510:2532..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12510 2533..2686 +
1691679138.9530363-CDS-H-elongata_contig12510:2532..26861691679138.9530363-CDS-H-elongata_contig12510:2532..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12510 2533..2686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.6757245-UTR-H-elongata_contig12510:2686..33671622929738.6757245-UTR-H-elongata_contig12510:2686..3367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12510 2687..3367 +
1691679138.9627917-UTR-H-elongata_contig12510:2686..33671691679138.9627917-UTR-H-elongata_contig12510:2686..3367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12510 2687..3367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12510.1888.1

>prot_H-elongata_contig12510.1888.1 ID=prot_H-elongata_contig12510.1888.1|Name=mRNA_H-elongata_contig12510.1888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QAGYEELINLHGIGFHRAQRILETSHVFCGRSVTPFKGLADLSRIGMFPK
EIEKMGKNNMFECLDVGHVRPDLAP*
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mRNA from alignment at H-elongata_contig12510:2066..3367+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12510.1888.1 ID=mRNA_H-elongata_contig12510.1888.1|Name=mRNA_H-elongata_contig12510.1888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1302bp|location=Sequence derived from alignment at H-elongata_contig12510:2066..3367+ (Himanthalia elongata Himel1 dioecious)
CAGGCTGGCTACGAGGAACTGATTAACCTCCACGGGATCGGATTCCACCG
TGCGCAGCGTATTTTGGAGACAAGGTGAGCGATGCGCATTTTACTCACGC
AGGCTTGACTGGACGCGTGCGCGCAGTCCGGAGCTGAAGGCCTTCGAACG
CGCCGAGCTGTGCAGGGCATCGGTTACCTTAAGTCCGCGTGCTTGTCTTG
ATTGTAATGTATTACATGGGCGAGTGCACCCGCGCGATGCCGAATAATAC
TATTAATAGTAATATAAAAGGAGTGGAACGTTTCTATTGGATACGTTATT
ATACTGACTGTTAGGTTGGTACAGTTGCTGAGGGCGACGTTCGACCGAGG
ACTATGTTTTTCAGAGCTAACTCGCGCATCGCCCACTTCATGTGCCTCCC
TCCCTCGCCTCACCCTTTCTCAATAATGATGTTTGCGAAACTTGTGACGC
GGCCCCATCCTATGGAGCCATGTATTTTGCGGCAGGTCCGTTACCCCCTT
CAAGGGCTTAGCTGATCTTTCTCGTATTGGCATGTTTCCCAAGGAGATCG
AGAAAATGGGCAAGAACAACATGTTCGAGTGCCTTGATGTAGGTCACGTC
AGGCCCGACCTTGCACCATAGGATCGGGATATCACCATGATGACCGAGCT
TCTCTAGCTTGCAGGATCGAAGGAGTGTCTGTCCGGATGGTCAGTCTCTT
CTCGCGGAGACAAAAACGATGCAGCTTCCGGATAGATGCTCCCTCGGTGT
ATGGATGGAGCCGCGGCTTTTCCGGCGTGACGATGTATCATAGGATTCTA
CCTACTTGGGTTTAAAGAAGAGCGCTTGGATTGCTGATAAGCTTGGAATA
TACAATATTTTGTACAGTGAAAAGCTTCCTTGGCAATCTTAGCGTGATCT
GTCACGAGAGGCGAGTAAGCACCAGACGGTTCAACGAGTAACGTAGTAAA
TGCTTTAATTCAGACGAGAGATGCTTACAGCGGGTGACATGGGTGACGCC
CTTGAGAAGGGTCGAGCTGGGATTCCGCACGTGTACGTAAGATTTTTTTT
TTTCGCGACATAAGATCTTTCTAGTACAGTATCCCCTTGGTTCAATGGAG
TTCCTACTCGTTTTGCGGAAATTATTTTGTTTATTTTTTTCCCGTGTATA
GTAGTACGAAACATTACATGTATTTGATAATGAGTCCTAAAATTTAGGTC
GTGGATAGCGTGTGCATAAGAGTAGGGAGTGAGTGTATGGGTTCTTCTGA
CGATTGTGGTACGAGGTAAAAGGCATCAAAACGAAATGTAACGAAAAACG
AC
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Coding sequence (CDS) from alignment at H-elongata_contig12510:2066..3367+

>mRNA_H-elongata_contig12510.1888.1 ID=mRNA_H-elongata_contig12510.1888.1|Name=mRNA_H-elongata_contig12510.1888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig12510:2066..3367+ (Himanthalia elongata Himel1 dioecious)
CAGGCTGGCTACGAGGAACTGATTAACCTCCACGGGATCGGATTCCACCG
TGCGCAGCGTATTTTGGAGACAAGCAGGCTGGCTACGAGGAACTGATTAA
CCTCCACGGGATCGGATTCCACCGTGCGCAGCGTATTTTGGAGACAAGCC
ATGTATTTTGCGGCAGGTCCGTTACCCCCTTCAAGGGCTTAGCTGATCTT
TCTCGTATTGGCATGTTTCCCAAGGAGATCGAGAAAATGGGCAAGAACAA
CATGTTCGAGTGCCTTGATGTAGGTCACGTCAGGCCCGACCTTGCACCAT
AGCCATGTATTTTGCGGCAGGTCCGTTACCCCCTTCAAGGGCTTAGCTGA
TCTTTCTCGTATTGGCATGTTTCCCAAGGAGATCGAGAAAATGGGCAAGA
ACAACATGTTCGAGTGCCTTGATGTAGGTCACGTCAGGCCCGACCTTGCA
CCATAG
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