mRNA_H-elongata_contig125049.1887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125049.1887.1
Unique NamemRNA_H-elongata_contig125049.1887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A8J2AB22_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AB22_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 2.580e-8
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   28 WEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYR 156
            W + +  G +P+ RSCP+W    ++ Y+FGGYDGV R+NDFY+
Sbjct:  354 WLKTQQEGNIPTGRSCPAWATHQESFYLFGGYDGVHRLNDFYQ 396
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A0G4FUT3_9ALVE (BTB domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FUT3_9ALVE)

HSP 1 Score: 57.0 bits (136), Expect = 4.060e-7
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 MHETKDTTLWEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYR 156
            M+  KD  +W++V   G+ P+ RS  +    GD +YVFGGYDGVQR ND Y+
Sbjct:    2 MNVMKDVFVWKDVGALGKCPTKRSLHTMVSVGDCLYVFGGYDGVQRCNDLYK 53
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A7S2R788_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R788_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.960e-6
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   37 VETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFY 153
             +  G +PS RSCPSW +  D++++FGG+DGV R ND +
Sbjct:  235 TDVEGDIPSKRSCPSWVQRDDSIFLFGGFDGVNRKNDLF 273
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A7S1GWP6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWP6_HEMAN)

HSP 1 Score: 53.9 bits (128), Expect = 2.330e-6
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   28 WEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYRCDLETM 174
            WE+ +T+G  PS R      K+G+ VYV GG+DGV+ +ND +  DL TM
Sbjct:   69 WEKAKTTGAGPSQRVYSGVAKEGECVYVHGGFDGVEHLNDTWMLDLRTM 117
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A835YYB0_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-6
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   28 WEEVETSGQLPSIRSCPSWCKDGDNVYV 111
            WE++ T+G +PSIRSCPSWCK+G  VYV
Sbjct:  185 WEQMPTTGAIPSIRSCPSWCKEGSKVYV 212
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A1Y2GA38_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GA38_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 8.200e-6
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   13 KDTTLWEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYRCDLETM 174
            ++T  W   +T+G  P  R   + C   +++YVFGG DGVQ +ND Y+ DL TM
Sbjct:  103 QNTLTWTNPQTTGTRPCRRRAHTTCVYSNHIYVFGGGDGVQALNDTYQLDLITM 156
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A1Y2GJG5_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GJG5_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 9.160e-6
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   16 DTTLWEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYRCDLETM 174
            DT  W   +T+G  P  R   + C   + +YVFGG DGVQ +ND Y+ DL  M
Sbjct:  281 DTLTWTNPQTTGDKPCRRRAHTTCVYNNCIYVFGGGDGVQALNDIYKLDLAEM 333
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.690e-5
Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:   16 DTTLWEEVETSG-QLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDF 150
            DT  W  V+  G + P  R C   C  GD++YVFGGYDG  R+NDF
Sbjct:   14 DTRKWSPVQAMGAKAPGHRFCHVACVHGDSMYVFGGYDGSNRLNDF 59
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A812UUQ1_9DINO (MPP protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812UUQ1_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 6.190e-5
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   16 DTTLWEEVETS-GQLPSIRSCPSWCKDGD----NVYVFGGYDGVQRMNDFYRCDLET 171
            +T  W EV T+ G   S   CP +C   D    ++YVFGGYDG QR+NDF++  L T
Sbjct:   21 ETDQWTEVRTTPGAQKSNVPCPRFCHTCDVYNNSLYVFGGYDGQQRLNDFWQFKLAT 77
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BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Match: A0A197JKZ0_9FUNG (Galactose oxidase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JKZ0_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 7.940e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   16 DTTLWEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDFYRCDLETM 174
            DT  W   +T+G+ P  R   + C   + +YVFGG DGVQ +ND Y+ +L  M
Sbjct:  261 DTLTWTNPQTTGKRPRRRRAHTTCVYNNCIYVFGGGDGVQALNDTYQLNLADM 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125049.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8J2AB22_9DINO2.580e-848.84Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A0G4FUT3_9ALVE4.060e-748.08BTB domain-containing protein n=1 Tax=Chromera vel... [more]
A0A7S2R788_9STRA1.960e-648.72Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1GWP6_HEMAN2.330e-646.94Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835YYB0_9STRA4.890e-667.86BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1Y2GA38_9FUNG8.200e-642.59Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A1Y2GJG5_9FUNG9.160e-643.40Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A7S2BYV7_9STRA1.690e-550.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812UUQ1_9DINO6.190e-545.61MPP protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A197JKZ0_9FUNG7.940e-541.51Galactose oxidase n=1 Tax=Linnemannia elongata AG-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125049contigH-elongata_contig125049:404..1847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.566345-CDS-H-elongata_contig125049:403..6071622929738.566345-CDS-H-elongata_contig125049:403..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125049 404..607 -
1691679138.9274213-CDS-H-elongata_contig125049:403..6071691679138.9274213-CDS-H-elongata_contig125049:403..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125049 404..607 -
1622929738.5896015-CDS-H-elongata_contig125049:1712..18471622929738.5896015-CDS-H-elongata_contig125049:1712..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125049 1713..1847 -
1691679138.9351761-CDS-H-elongata_contig125049:1712..18471691679138.9351761-CDS-H-elongata_contig125049:1712..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125049 1713..1847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125049.1887.1prot_H-elongata_contig125049.1887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125049 404..1847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125049.1887.1

>prot_H-elongata_contig125049.1887.1 ID=prot_H-elongata_contig125049.1887.1|Name=mRNA_H-elongata_contig125049.1887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MHETKDTTLWEEVETSGQLPSIRSCPSWCKDGDNVYVFGGYDGVQRMNDF
YRCDLETMTWAQIPGLGAVPTPRYFHSCAVHNGSMYVFGGYNGSDRLCDF
FEHNFETGMWTEL
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mRNA from alignment at H-elongata_contig125049:404..1847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125049.1887.1 ID=mRNA_H-elongata_contig125049.1887.1|Name=mRNA_H-elongata_contig125049.1887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1444bp|location=Sequence derived from alignment at H-elongata_contig125049:404..1847- (Himanthalia elongata Himel1 dioecious)
ATGCATGAAACCAAAGATACCACCTTGTGGGAGGAAGTGGAGACGTCAGG
ACAGTTACCGAGCATCCGGTCGTGTCCATCCTGGTGCAAGGACGGTGACA
ACGTCTACGTTTTCGGGGGCTATGACGGGGTGCAGGTATAGCGAGCGCGA
CCCGATCTCGTTCCTCCGATGAATTGACTTAAATAATAGTGTACTCTCTC
GCCGCCTTCTGTCTGTGTGCCTACCTCTGCGTTCGCTCTTGAGCAAAAAA
AAAAAATGTTTTGATCTCGCGCCGGTCTCGACCTCCGATACATTATCCTC
CAAGTAAGCTATATATATACTATATATATATATAGTATATATTTTTTATT
GATCCCTTGGAGCCGCGTGTGGTGGATTAGGTAGAAAGAGGCGTTGCTGT
TCCATAAAAATGGGTTCTCAGAGTTTGTGCTTGGAACTTGTTTTTCTTCT
TTTTTGGGGGGGGGGGGGGGGGGGGAGGATTTAAAAAAAATGGCCAGTGA
AGGCGAAAAAATCTCTTTTAGGTAGCAATAGTTGGTAATACATGTTCAAA
GTAAGGAAGAACGATTCGATTGGCCCTTCGGCGATCGAGTCACGCCCGGT
CCTCCCGACGTGCCTGGTCAATAGTAGTATCAGCTAAAGGTATCGCGCAC
GCCTCTCCCTCCCTATTGAGCTGCAAGAACAAAATATGGAGAGTGGAAAT
TTATCAAATCAAGTAATGTAATCATATATATATATACGTATATACTGGTA
TTAAATATACGAAGTATATCTTTATTTATTTTTTCTCATGTATGTGCCAT
TCGATTTATTATTTATTTTTTTACGAAAAAAATAACGTTTAGCTGAGATT
TATATATATATATATATCATATATATTATGTACCATACTTTCCCTGCGCT
CCTTCGTCTTTAGAGATCGCGCTACTTTCTTCAGTGGAAAGAAAAAAAAA
TGGCCAATGTAAACTCGGCATCAATCCATAGTCCCGACATTTTTGGGATG
CTTGGTATGTGTCTCGTCCTGATACGACTGCGTTTAACCTGAGTACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAACACACAAAAAAGC
ACCGCCACCCCACGCCCCCCCGCCAGCNNNNNNNNNNGGATGGTTCGTAT
GTGTCTCGTCCTGAGTCCCCTGCGTTTAACCTGAGGACCCCCCCCCCCCC
GTCCATCCCCCCGTCCATCCTCCAAAAAATCGAAAATAAGCGCATGAACG
ACTTCTACCGCTGCGATCTGGAAACGATGACGTGGGCGCAAATACCGGGG
CTCGGCGCGGTGCCCACCCCGCGATATTTTCATTCTTGCGCCGTCCACAA
CGGGAGCATGTACGTCTTCGGCGGCTACAACGGCTCCGACCGCCTGTGCG
ATTTCTTCGAGCACAACTTCGAGACGGGGATGTGGACGGAGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig125049:404..1847-

>mRNA_H-elongata_contig125049.1887.1 ID=mRNA_H-elongata_contig125049.1887.1|Name=mRNA_H-elongata_contig125049.1887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig125049:404..1847- (Himanthalia elongata Himel1 dioecious)
ATGCATGAAACCAAAGATACCACCTTGTGGGAGGAAGTGGAGACGTCAGG
ACAGTTACCGAGCATCCGGTCGTGTCCATCCTGGTGCAAGGACGGTGACA
ACGTCTACGTTTTCGGGGGCTATGACGGGGTGCAGATGCATGAAACCAAA
GATACCACCTTGTGGGAGGAAGTGGAGACGTCAGGACAGTTACCGAGCAT
CCGGTCGTGTCCATCCTGGTGCAAGGACGGTGACAACGTCTACGTTTTCG
GGGGCTATGACGGGGTGCAGCGCATGAACGACTTCTACCGCTGCGATCTG
GAAACGATGACGTGGGCGCAAATACCGGGGCTCGGCGCGGTGCCCACCCC
GCGATATTTTCATTCTTGCGCCGTCCACAACGGGAGCATGTACGTCTTCG
GCGGCTACAACGGCTCCGACCGCCTGTGCGATTTCTTCGAGCACAACTTC
GAGACGGGGATGTGGACGGAGCTGCGCATGAACGACTTCTACCGCTGCGA
TCTGGAAACGATGACGTGGGCGCAAATACCGGGGCTCGGCGCGGTGCCCA
CCCCGCGATATTTTCATTCTTGCGCCGTCCACAACGGGAGCATGTACGTC
TTCGGCGGCTACAACGGCTCCGACCGCCTGTGCGATTTCTTCGAGCACAA
CTTCGAGACGGGGATGTGGACGGAGCTG
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