mRNA_H-elongata_contig125004.1886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125004.1886.1
Unique NamemRNA_H-elongata_contig125004.1886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: D8LNA6_ECTSI (Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.910e-53
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG +FHTNPN+LHY+NNESNGIMK GHTFTIEPMICEG+AKSVMWPDKWTAATADG+RTAQFEHT LMT DGA PLT KL++SPR FWEK
Sbjct:  310 GHGIGKLFHTNPNILHYKNNESNGIMKEGHTFTIEPMICEGTAKSVMWPDKWTAATADGRRTAQFEHTFLMTADGAVPLTGKLDTSPRQFWEK 402          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A6H5KGM2_9PHAE (Methionine aminopeptidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.790e-48
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG  FH NP VLH++N+ +NGIM  GHTFTIEP+ICEG+ ++VMWPDKWTAATADGKRTAQFEHT L+TE+GA PLTAKL+SSPR FWEK
Sbjct:  178 GHGIGKTFHANPYVLHHKNDVNNGIMAVGHTFTIEPLICEGTGQNVMWPDKWTAATADGKRTAQFEHTFLLTEEGAVPLTAKLDSSPRQFWEK 270          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A835YRW9_9STRA (Methionine aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 9.480e-48
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG++FHTNP +LHY+NNE NG+M+ GHTFTIEPMICEG   +V+WPDKWTAAT DGKRTAQFEHT LM E+G  PLT KL++SPR FWEK
Sbjct:  225 GHGIGSVFHTNPTILHYKNNEPNGVMRVGHTFTIEPMICEGKPDNVVWPDKWTAATIDGKRTAQFEHTFLMNENGVEPLTGKLQTSPRQFWEK 317          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: D8LNA9_ECTSI (Methionine aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA9_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.010e-46
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG  FH NP VLH++N+ +NGIM  GHTFTIEP+ICEG+ +++MWPDKWTAATADGKRTAQFEHTLL+TE+GA PLTAKL+SSPR FWEK
Sbjct:  329 GHGIGKTFHANPYVLHHKNDVNNGIMAVGHTFTIEPLICEGTGQNLMWPDKWTAATADGKRTAQFEHTLLLTEEGAVPLTAKLDSSPRQFWEK 421          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A7S2JWD7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWD7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.560e-46
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG++FH+ PN+LHYRNNE  G M  GHTFTIEPMICEG AK V WPD+WTAATADGKRTAQFEHTLL+T DG  PLT KL +SP  FWE+
Sbjct:   42 GHGIGSVFHSTPNILHYRNNEPAGQMAYGHTFTIEPMICEGVAKHVSWPDEWTAATADGKRTAQFEHTLLVTHDGVEPLTGKLPTSPVQFWEE 134          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A7S1BMF1_9STRA (Methionine aminopeptidase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMF1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.540e-46
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG++FHTNPN+LHY+N+E NG+M PGHTFTIEPMICE SA+SV WPD WTAAT+DG RTAQFEHTLL+TEDG  PLT KL +SP  FWE+
Sbjct:  340 GHGIGSVFHTNPNILHYKNSEPNGVMAPGHTFTIEPMICERSARSVNWPDDWTAATSDGGRTAQFEHTLLVTEDGVIPLTGKLPTSPVQFWEE 432          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A6V1URZ5_HETAK (Methionine aminopeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1URZ5_HETAK)

HSP 1 Score: 158 bits (400), Expect = 1.420e-45
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG +FH NPNVLHY+NNE  G M+PGH FTIEPMICEG+A++VMWPDKWTAATADGKRTAQFEHT L+T  G   LTAKL  SP+ FWEK
Sbjct:  261 GHGIGKVFHCNPNVLHYKNNEPCGKMEPGHVFTIEPMICEGTARNVMWPDKWTAATADGKRTAQFEHTFLLTATGVEALTAKLPDSPKQFWEK 353          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A7S2FNH4_9STRA (Methionine aminopeptidase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNH4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.500e-45
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLE-SSPRHFWEK 279
            GHGIG+IFHT PN+LHYRN E NG+M+PGHTFTIEPMI EG+ K + WPDKWTA TADG R+AQFEHTLLMTEDG  PLTAK+E SS   FWEK
Sbjct:  161 GHGIGSIFHTTPNILHYRNKEPNGVMQPGHTFTIEPMINEGTDKVLFWPDKWTATTADGGRSAQFEHTLLMTEDGVVPLTAKVEGSSMEQFWEK 254          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A7S3V406_9STRA (Methionine aminopeptidase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V406_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.890e-45
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK 279
            GHGIG++FHTNPN+ HYRNNE NG M PGHTFTIEPMICEGSAK++ WPD+WTA T DGKRTAQFEHTLL++++G   LT K+E+SP  FWEK
Sbjct:  314 GHGIGSVFHTNPNIFHYRNNEPNGQMAPGHTFTIEPMICEGSAKALNWPDQWTATTTDGKRTAQFEHTLLISKEGVEALTGKIETSPIQFWEK 406          
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Match: A0A7S2BSQ1_9STRA (Methionine aminopeptidase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSQ1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.650e-44
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPDKWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLE-SSPRHFWEK 279
            GHGIG+IFHT PN+LHYRN E NG+M+PGHTFTIEPMI EG+ K + WPDKWTA TADG R+AQFEHTLLMTEDG  PLTAK+E SS   FWEK
Sbjct:  236 GHGIGSIFHTTPNILHYRNKEPNGVMQPGHTFTIEPMINEGTDKVLFWPDKWTATTADGGRSAQFEHTLLMTEDGVVPLTAKVEGSSMEQFWEK 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125004.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNA6_ECTSI1.910e-5384.95Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID... [more]
A0A6H5KGM2_9PHAE7.790e-4876.34Methionine aminopeptidase n=1 Tax=Ectocarpus sp. C... [more]
A0A835YRW9_9STRA9.480e-4874.19Methionine aminopeptidase n=1 Tax=Tribonema minus ... [more]
D8LNA9_ECTSI2.010e-4676.34Methionine aminopeptidase n=1 Tax=Ectocarpus silic... [more]
A0A7S2JWD7_9STRA2.560e-4674.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1BMF1_9STRA3.540e-4675.27Methionine aminopeptidase n=2 Tax=Corethron hystri... [more]
A0A6V1URZ5_HETAK1.420e-4575.27Methionine aminopeptidase n=1 Tax=Heterosigma akas... [more]
A0A7S2FNH4_9STRA2.500e-4575.53Methionine aminopeptidase n=1 Tax=Dictyocha specul... [more]
A0A7S3V406_9STRA3.890e-4573.12Methionine aminopeptidase n=1 Tax=Chaetoceros debi... [more]
A0A7S2BSQ1_9STRA1.650e-4475.53Methionine aminopeptidase n=1 Tax=Dictyocha specul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125004contigH-elongata_contig125004:196..1748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue7.4e-43
Seed eggNOG ortholog2880.D8LNA6
KEGG koko:K01265
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2738@2759
Ec32 ortholog descriptionMethionine aminopeptidase
Ec32 orthologEc-04_004530.2
EC3.4.11.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmethionine aminopeptidase
Ec32 orthologEc-04_004560.1
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.4950132-CDS-H-elongata_contig125004:195..3501622929738.4950132-CDS-H-elongata_contig125004:195..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125004 196..350 -
1691679138.9067655-CDS-H-elongata_contig125004:195..3501691679138.9067655-CDS-H-elongata_contig125004:195..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125004 196..350 -
1622929738.5182533-CDS-H-elongata_contig125004:1621..17481622929738.5182533-CDS-H-elongata_contig125004:1621..1748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125004 1622..1748 -
1691679138.9196637-CDS-H-elongata_contig125004:1621..17481691679138.9196637-CDS-H-elongata_contig125004:1621..1748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125004 1622..1748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125004.1886.1prot_H-elongata_contig125004.1886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125004 196..1748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125004.1886.1

>prot_H-elongata_contig125004.1886.1 ID=prot_H-elongata_contig125004.1886.1|Name=mRNA_H-elongata_contig125004.1886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GHGIGAIFHTNPNVLHYRNNESNGIMKPGHTFTIEPMICEGSAKSVMWPD
KWTAATADGKRTAQFEHTLLMTEDGAFPLTAKLESSPRHFWEK*
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mRNA from alignment at H-elongata_contig125004:196..1748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125004.1886.1 ID=mRNA_H-elongata_contig125004.1886.1|Name=mRNA_H-elongata_contig125004.1886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-elongata_contig125004:196..1748- (Himanthalia elongata Himel1 dioecious)
GGACACGGCATCGGTGCCATTTTCCACACCAACCCGAACGTTCTACACTA CAGGAACAACGAGTCCAATGGCATCATGAAGCCCGGGCACACGTTTACCA TCGAGCCGATGATTTGCGAGGGGAGCGGTAAGGCCCAACGTTTGGCTTGG CTATCGGTTTGTAGACCCCTTGGGAGGCTAGCTAAATAGCGAGCGAGCGA GCTTTAGGGTTGTACCTGCACAAGATTTCATGATTTCCGAAGGCTTGGTA GCGTCTTAGGATGGTGTTGTACCTGCACAAGCGTCTTAGGATGGTGTAAG GCGAGAAGTAGTTCGTCAAGGCCATGCTCGACGGGCGTGATTGATTGGTA GTGGTAGGTCAATACTTGCTCTTATTATTATTAGTTATTTGCAGTATAGA AATGTTTTCGCAAAACGTGTTGGTCCATGGGGTTACCTGAATAGGCTGCA CCCGTTACTCAAGCTACTTTGAGGATTGCTGGCTCAGTGTCGGCGGGCTC TCGCTAGTAAACGTCATCGGTAAGCAATTGTGTGACCTGATGAAATCGGG ATTGGCCCGATGGCGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAACG GGAGGATCGAGAGGATCCCGGGAGTAGGCAGTATTAGCACAATATTAAAA TGGGCAGGCTCACGCAGGACGGGACGGGACTGCCGAAACCGTCTCAGGCG CAAACAGGGACAAGGGGAAAATTCATTTTCCCTGTTATTCAGCTGACCAC AAACAGGATAGGGAACCTAATCCGGTTGATCGTTACTATACTATGTTATA TATATACTGATGTGAATATGATGACGTCATGACCACACCGTTGTAGCAGA GTGTTAAGAGCCGATCTTGTCGCTTGAAAAAACAATCGCCCGCGATAAGA TTTGTATCGTTTGACGTTGGCGTGTTCACCAATTTAATGATCGCTTCGAC ACGTCTATAAACTCTCTTCAGAAGTTCTAGAATAAAAAAATATTTTACTA TAATGGGGTCCATTTTCCTAGCTGTCATGGAACCCCCGCCCCCCACTCCT CCTCACCGTTTATTGTTTAGTTGGACTCTAGACCATCACCGAAGTCATTC TTGTAAAGTAGACGAAGCTCGGGAAAACGCAGTTCCTATGCAAGACCTCG CAACTGCGCTACCACGCTGTTGTCTACTAAACTATCTGCCTGATATTGGT ATTTCCTCGGCCGTTACCGTTACCGTATTACCGCGGTCGCTTCCGTCTTG TCTTTTTCGCCGTATTGTTTACTCATATTAATACATTAATAAAGATATTA CAGAGCAGTACAACACAATGCAAAAAAAATATTACTCGTTTCTGTCGAAA CCCGAGACTGACTCCTACACGTGTTGTGATTTTGTTTTGTGTTCTCAGCC AAGAGCGTCATGTGGCCGGACAAGTGGACGGCGGCAACGGCGGATGGCAA ACGAACGGCGCAATTCGAGCACACTCTGCTCATGACGGAGGATGGGGCGT TTCCCCTGACGGCCAAGCTAGAGTCATCGCCGAGGCACTTCTGGGAGAAA TGA
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Coding sequence (CDS) from alignment at H-elongata_contig125004:196..1748-

>mRNA_H-elongata_contig125004.1886.1 ID=mRNA_H-elongata_contig125004.1886.1|Name=mRNA_H-elongata_contig125004.1886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig125004:196..1748- (Himanthalia elongata Himel1 dioecious)
GGACACGGCATCGGTGCCATTTTCCACACCAACCCGAACGTTCTACACTA
CAGGAACAACGAGTCCAATGGCATCATGAAGCCCGGGCACACGTTTACCA
TCGAGCCGATGATTTGCGAGGGGAGCGGGACACGGCATCGGTGCCATTTT
CCACACCAACCCGAACGTTCTACACTACAGGAACAACGAGTCCAATGGCA
TCATGAAGCCCGGGCACACGTTTACCATCGAGCCGATGATTTGCGAGGGG
AGCGCCAAGAGCGTCATGTGGCCGGACAAGTGGACGGCGGCAACGGCGGA
TGGCAAACGAACGGCGCAATTCGAGCACACTCTGCTCATGACGGAGGATG
GGGCGTTTCCCCTGACGGCCAAGCTAGAGTCATCGCCGAGGCACTTCTGG
GAGAAATGACCAAGAGCGTCATGTGGCCGGACAAGTGGACGGCGGCAACG
GCGGATGGCAAACGAACGGCGCAATTCGAGCACACTCTGCTCATGACGGA
GGATGGGGCGTTTCCCCTGACGGCCAAGCTAGAGTCATCGCCGAGGCACT
TCTGGGAGAAATGA
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