mRNA_H-elongata_contig12495.1883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12495.1883.1
Unique NamemRNA_H-elongata_contig12495.1883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.660e-52
Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    1 VMPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            VMPK K  +SQG AF TSLFTD+AGVA+QGVRQATTLGEDD RL VPG VWFAKPRRLK+GATL RVM GN++EDMLWQLHDIMLTKSMLSHHRLDKYIK LDRV
Sbjct:  552 VMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.050e-36
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 VMPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            V+P+   F  Q  A GT+LFTD+AGVA QG+RQ +  G DD+ L VPG VWF KPRRL++GAT+ +  +G LR+D+LWQ+HD+MLTKSMLSHH L +Y+  LDRV
Sbjct:  400 VLPRGSGFFGQSLAMGTTLFTDVAGVAAQGLRQRSAAGGDDSALIVPGTVWFVKPRRLRAGATMTKSRSGALRDDVLWQMHDVMLTKSMLSHHSLARYVAVLDRV 504          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.850e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   22 FISQGAAFGT------SLFTDIAGVAIQGV--RQATTLGEDDTR-----LAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            ++S+G A G       S    + G  +Q V   Q T   E++       L +PG V++ KPR+L  GAT+  VM GNLRED+LW++HDI +++SML HH LDKYI  L R+
Sbjct:  477 YVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGVEALILPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWKIHDIFVSQSMLKHHSLDKYITVLARI 587          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S1B8E3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.270e-12
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   37 AAFGTSLFTDIAGVAIQGV--RQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            +A G S  +     ++ G+  R A   GE+  R++VPG  +  KPRRL  GA++  V  GN+R ++LWQLHD+ L+  M  H  LD YI  LDRV
Sbjct:  441 SAVGASWVSAAVSTSVDGIGKRVAGREGEE-FRMSVPGKAFVVKPRRLDHGASMYEVEEGNVRAEVLWQLHDVPLSIKMWRHGTLDSYIHGLDRV 534          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: K0SG86_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SG86_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 1.710e-12
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   55 LFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG----NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            + +D   + + G+ +     + D +L++PG V+  +PRRL  G++    +N     +LR  +LWQL DI+L++S+ SHHRL+ YI+TLD+V
Sbjct:   28 IMSDAVSLTVSGIGKDK---KGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A6T5V5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5V5A5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.030e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  118 DDTRLAVPGLVWFAKPRRLKSGATLARVMN----GNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            ++T+L++PG  +F KPRRL    +L  V +    G +R  +LWQL DI+L+KSM  HH LD YI+ LDRV
Sbjct:  474 EETKLSIPGTKYFVKPRRLGGACSLHHVGDISGTGAIRASVLWQLDDILLSKSMWDHHGLDNYIQALDRV 543          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S3ZRK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.090e-11
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   34 GAAFGTSLFTDIAGVAIQGV--RQATTLGEDDTRLAVPGLVWFAKPRRLKSGAT-LARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            GAA   S F    G A + V   Q T L +DD  L +PG V+F KPR    GA  + R   G  RE++LWQL+D++L+KSML+H  LD YI  LDR+
Sbjct:  374 GAALAGSAFEQGMGAAGRAVTDEQRTKLTDDD-ELRLPGDVFFLKPRA--DGAVGVYRGGAGRAREELLWQLNDVLLSKSMLAHATLDAYISALDRI 467          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S2LJY6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJY6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.890e-11
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   46 GTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG------NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            G    +D A + + G+   ++  + D  LAVPG V+  +PRR+  G++    + G      N R  +LWQL+D++L+KS+  HH    YI++LDRV
Sbjct:  439 GVGWMSDAARLTVTGLTSGSSK-KKDAHLAVPGRVYLIRPRRIGGGSSSIHEVGGSIGGRENFRAAVLWQLNDVLLSKSLWKHHSQSSYIRSLDRV 533          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S2FE87_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FE87_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-10
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  115 EDDTRLAVPGLVWFAKPRRLKSGAT-LARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            ++DT L+ PG+V+  KPR   SG   +     G + E +LWQLHDI+++KSML+HH L  Y++ LD V
Sbjct:  112 DEDTLLSCPGVVYMLKPRA--SGQVHMVTTKRGGIGESLLWQLHDILISKSMLAHHTLPAYVRCLDVV 177          
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: K0SZK5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZK5_THAOC)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-10
Identity = 32/91 (35.16%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   55 LFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG----NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
            + +D   + + G+ +     + D +L++PG V+  +PRRL  G++    +N     +LR  +LWQL DI+L++S+ SHH+++ YI+TLD+V
Sbjct:  433 IMSDAVSLTVSGIGKDK---KGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKQSLRAAVLWQLKDILLSRSLWSHHQVEGYIRTLDKV 520          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LI31_ECTSI2.660e-5283.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUE7_9STRA1.050e-3659.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DDN3_9STRA6.850e-1842.34Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1B8E3_9STRA1.270e-1242.11Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
K0SG86_THAOC1.710e-1237.36Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6T5V5A5_9STRA6.030e-1248.57Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3ZRK4_9STRA1.090e-1146.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LJY6_9STRA9.890e-1135.42Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2FE87_9STRA1.120e-1045.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K0SZK5_THAOC2.510e-1035.16Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12495contigH-elongata_contig12495:3221..4050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue5.7e-44
Seed eggNOG ortholog2880.D8LI31
EggNOG OGs2C0DA@1,2S938@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12495.1883.1prot_H-elongata_contig12495.1883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12495 3221..4047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.2573185-CDS-H-elongata_contig12495:3220..34391622929738.2573185-CDS-H-elongata_contig12495:3220..3439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12495 3221..3439 -
1691679138.7849426-CDS-H-elongata_contig12495:3220..34391691679138.7849426-CDS-H-elongata_contig12495:3220..3439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12495 3221..3439 -
1622929738.2692952-CDS-H-elongata_contig12495:3951..40471622929738.2692952-CDS-H-elongata_contig12495:3951..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12495 3952..4047 -
1691679138.8069017-CDS-H-elongata_contig12495:3951..40471691679138.8069017-CDS-H-elongata_contig12495:3951..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12495 3952..4047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.2820587-UTR-H-elongata_contig12495:4047..40501622929738.2820587-UTR-H-elongata_contig12495:4047..4050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12495 4048..4050 -
1691679138.8208644-UTR-H-elongata_contig12495:4047..40501691679138.8208644-UTR-H-elongata_contig12495:4047..4050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12495 4048..4050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12495.1883.1

>prot_H-elongata_contig12495.1883.1 ID=prot_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVW
FAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKT
LDRV*
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mRNA from alignment at H-elongata_contig12495:3221..4050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12495.1883.1 ID=mRNA_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig12495:3221..4050- (Himanthalia elongata Himel1 dioecious)
GTGATGCCGAAGAGGAAGAGTTTTATATCACAGGGAGCGGCGTTCGGAAC GAGCTTATTCACGGACATTGCTGGGGTCGCTATACAAGGAGTTCGACAGG TGCGATTGGTTGAAGCTTGCGCGGTCTTTTGGATATTGAGCTTGCTGTCC TAATTTTTTACATCATTTCGCGATATCCCACACGAGCCGTTGTATCTACT GTAGCTTTACCTCGGCTTGAACGTCATCAAAACGTGGGGAAGTGTGTGTG TAAATGTATTTTCTAGTGGAGATTGTAAGTGCCATAATCCACGATTTTGA AGCGGGAGTTCCATTTGAGACTTGCATTTTTTTTCAGGATGACGCGTGTT GCCTGTAAGCGTATGCACGCCTACGAAGTGAAGTTCAAGTGTAGCCGGCA CCTTTCAATCTGTATTTTTGTTTTGCTCTTCTCATCTCCCAGCCCCGCAC CAAGCGTTTTTTTTCGTGTCTAGCTCTGCTCCCTTTTGGCACTCGTGTTT TTGTTTTGATTTGTTTTTTACGGAGCACGACCTTCTGTGACACATGCTCT CGACCGGATCACAATTTTGTCCTTCTATCTTCTTTCTTTTGTGTTGAGCG TGCGTTCGCAGGCGACAACGCTGGGGGAAGACGACACACGCCTCGCGGTG CCCGGATTGGTGTGGTTTGCCAAGCCACGCCGACTCAAGAGCGGAGCCAC TCTGGCGCGCGTCATGAACGGGAATCTTAGGGAGGACATGTTGTGGCAGC TGCACGACATCATGCTCACGAAAAGCATGCTGTCGCACCACCGTTTGGAT AAGTACATCAAAACATTAGACAGAGTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig12495:3221..4050-

>mRNA_H-elongata_contig12495.1883.1 ID=mRNA_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig12495:3221..4050- (Himanthalia elongata Himel1 dioecious)
ATGCCGAAGAGGAAGAGTTTTATATCACAGGGAGCGGCGTTCGGAACGAG
CTTATTCACGGACATTGCTGGGGTCGCTATACAAGGAGTTCGACAGATGC
CGAAGAGGAAGAGTTTTATATCACAGGGAGCGGCGTTCGGAACGAGCTTA
TTCACGGACATTGCTGGGGTCGCTATACAAGGAGTTCGACAGGCGACAAC
GCTGGGGGAAGACGACACACGCCTCGCGGTGCCCGGATTGGTGTGGTTTG
CCAAGCCACGCCGACTCAAGAGCGGAGCCACTCTGGCGCGCGTCATGAAC
GGGAATCTTAGGGAGGACATGTTGTGGCAGCTGCACGACATCATGCTCAC
GAAAAGCATGCTGTCGCACCACCGTTTGGATAAGTACATCAAAACATTAG
ACAGAGTCTAGGCGACAACGCTGGGGGAAGACGACACACGCCTCGCGGTG
CCCGGATTGGTGTGGTTTGCCAAGCCACGCCGACTCAAGAGCGGAGCCAC
TCTGGCGCGCGTCATGAACGGGAATCTTAGGGAGGACATGTTGTGGCAGC
TGCACGACATCATGCTCACGAAAAGCATGCTGTCGCACCACCGTTTGGAT
AAGTACATCAAAACATTAGACAGAGTCTAG
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