mRNA_H-elongata_contig12495.1883.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.660e-52 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 1
Query: 1 VMPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
VMPK K +SQG AF TSLFTD+AGVA+QGVRQATTLGEDD RL VPG VWFAKPRRLK+GATL RVM GN++EDMLWQLHDIMLTKSMLSHHRLDKYIK LDRV
Sbjct: 552 VMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.050e-36 Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 VMPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
V+P+ F Q A GT+LFTD+AGVA QG+RQ + G DD+ L VPG VWF KPRRL++GAT+ + +G LR+D+LWQ+HD+MLTKSMLSHH L +Y+ LDRV
Sbjct: 400 VLPRGSGFFGQSLAMGTTLFTDVAGVAAQGLRQRSAAGGDDSALIVPGTVWFVKPRRLRAGATMTKSRSGALRDDVLWQMHDVMLTKSMLSHHSLARYVAVLDRV 504
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.850e-18 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 22 FISQGAAFGT------SLFTDIAGVAIQGV--RQATTLGEDDTR-----LAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
++S+G A G S + G +Q V Q T E++ L +PG V++ KPR+L GAT+ VM GNLRED+LW++HDI +++SML HH LDKYI L R+
Sbjct: 477 YVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGVEALILPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWKIHDIFVSQSMLKHHSLDKYITVLARI 587
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S1B8E3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.270e-12 Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 37 AAFGTSLFTDIAGVAIQGV--RQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
+A G S + ++ G+ R A GE+ R++VPG + KPRRL GA++ V GN+R ++LWQLHD+ L+ M H LD YI LDRV
Sbjct: 441 SAVGASWVSAAVSTSVDGIGKRVAGREGEE-FRMSVPGKAFVVKPRRLDHGASMYEVEEGNVRAEVLWQLHDVPLSIKMWRHGTLDSYIHGLDRV 534
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: K0SG86_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SG86_THAOC) HSP 1 Score: 68.2 bits (165), Expect = 1.710e-12 Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 55 LFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG----NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
+ +D + + G+ + + D +L++PG V+ +PRRL G++ +N +LR +LWQL DI+L++S+ SHHRL+ YI+TLD+V
Sbjct: 28 IMSDAVSLTVSGIGKDK---KGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A6T5V5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5V5A5_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.030e-12 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 118 DDTRLAVPGLVWFAKPRRLKSGATLARVMN----GNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
++T+L++PG +F KPRRL +L V + G +R +LWQL DI+L+KSM HH LD YI+ LDRV
Sbjct: 474 EETKLSIPGTKYFVKPRRLGGACSLHHVGDISGTGAIRASVLWQLDDILLSKSMWDHHGLDNYIQALDRV 543
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S3ZRK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK4_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.090e-11 Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 34 GAAFGTSLFTDIAGVAIQGV--RQATTLGEDDTRLAVPGLVWFAKPRRLKSGAT-LARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
GAA S F G A + V Q T L +DD L +PG V+F KPR GA + R G RE++LWQL+D++L+KSML+H LD YI LDR+
Sbjct: 374 GAALAGSAFEQGMGAAGRAVTDEQRTKLTDDD-ELRLPGDVFFLKPRA--DGAVGVYRGGAGRAREELLWQLNDVLLSKSMLAHATLDAYISALDRI 467
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S2LJY6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJY6_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 9.890e-11 Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 46 GTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG------NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
G +D A + + G+ ++ + D LAVPG V+ +PRR+ G++ + G N R +LWQL+D++L+KS+ HH YI++LDRV
Sbjct: 439 GVGWMSDAARLTVTGLTSGSSK-KKDAHLAVPGRVYLIRPRRIGGGSSSIHEVGGSIGGRENFRAAVLWQLNDVLLSKSLWKHHSQSSYIRSLDRV 533
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: A0A7S2FE87_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FE87_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.120e-10 Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 115 EDDTRLAVPGLVWFAKPRRLKSGAT-LARVMNGNLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
++DT L+ PG+V+ KPR SG + G + E +LWQLHDI+++KSML+HH L Y++ LD V
Sbjct: 112 DEDTLLSCPGVVYMLKPRA--SGQVHMVTTKRGGIGESLLWQLHDILISKSMLAHHTLPAYVRCLDVV 177
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Match: K0SZK5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZK5_THAOC) HSP 1 Score: 65.9 bits (159), Expect = 2.510e-10 Identity = 32/91 (35.16%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 55 LFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWFAKPRRLKSGATLARVMNG----NLREDMLWQLHDIMLTKSMLSHHRLDKYIKTLDRV 315
+ +D + + G+ + + D +L++PG V+ +PRRL G++ +N +LR +LWQL DI+L++S+ SHH+++ YI+TLD+V
Sbjct: 433 IMSDAVSLTVSGIGKDK---KGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKQSLRAAVLWQLKDILLSRSLWSHHQVEGYIRTLDKV 520 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12495.1883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12495.1883.1 >prot_H-elongata_contig12495.1883.1 ID=prot_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MPKRKSFISQGAAFGTSLFTDIAGVAIQGVRQATTLGEDDTRLAVPGLVWback to top mRNA from alignment at H-elongata_contig12495:3221..4050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12495.1883.1 ID=mRNA_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig12495:3221..4050- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12495:3221..4050- >mRNA_H-elongata_contig12495.1883.1 ID=mRNA_H-elongata_contig12495.1883.1|Name=mRNA_H-elongata_contig12495.1883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig12495:3221..4050- (Himanthalia elongata Himel1 dioecious)back to top |