mRNA_H-elongata_contig12492.1879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12492.1879.1
Unique NamemRNA_H-elongata_contig12492.1879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12492.1879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12492contigH-elongata_contig12492:2354..2953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12492.1879.1prot_H-elongata_contig12492.1879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12492 2385..2743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.8832731-UTR-H-elongata_contig12492:2353..23841622929737.8832731-UTR-H-elongata_contig12492:2353..2384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12492 2354..2384 +
1691679138.6186552-UTR-H-elongata_contig12492:2353..23841691679138.6186552-UTR-H-elongata_contig12492:2353..2384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12492 2354..2384 +
1622929737.925065-UTR-H-elongata_contig12492:2743..29531622929737.925065-UTR-H-elongata_contig12492:2743..2953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12492 2744..2953 +
1691679138.653881-UTR-H-elongata_contig12492:2743..29531691679138.653881-UTR-H-elongata_contig12492:2743..2953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12492 2744..2953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.8976762-CDS-H-elongata_contig12492:2384..25701622929737.8976762-CDS-H-elongata_contig12492:2384..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 2385..2570 +
1691679138.6335406-CDS-H-elongata_contig12492:2384..25701691679138.6335406-CDS-H-elongata_contig12492:2384..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 2385..2570 +
1622929737.9124136-CDS-H-elongata_contig12492:2680..27431622929737.9124136-CDS-H-elongata_contig12492:2680..2743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 2681..2743 +
1691679138.6450908-CDS-H-elongata_contig12492:2680..27431691679138.6450908-CDS-H-elongata_contig12492:2680..2743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 2681..2743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12492.1879.1

>prot_H-elongata_contig12492.1879.1 ID=prot_H-elongata_contig12492.1879.1|Name=mRNA_H-elongata_contig12492.1879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MVHLLSIGRLETISLYSKFLVARATQGIVRPFCDTRVCRIGLNRPVPFEE
LARSFHVASFTPVLPKQKQKSKYFFVCTPQIK*
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mRNA from alignment at H-elongata_contig12492:2354..2953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12492.1879.1 ID=mRNA_H-elongata_contig12492.1879.1|Name=mRNA_H-elongata_contig12492.1879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at H-elongata_contig12492:2354..2953+ (Himanthalia elongata Himel1 dioecious)
GCCATAATAGCCGTAACCATAATAATAGTAGATGGTTCACCTTCTTTCCA
TCGGAAGGCTGGAGACCATTTCGTTATATTCAAAATTCCTTGTCGCCAGA
GCCACGCAAGGAATCGTTCGTCCCTTTTGTGATACCAGGGTATGTCGTAT
CGGCCTTAATCGTCCAGTCCCCTTTGAAGAGCTCGCTCGGAGCTTCCATG
TTGCCTCCTTCACCCCGAGAAAGAGGCACAGCCTGTATAAACATTAGCCG
GCCATCATGCTAGTCTAGAGATATACTAATAGTACCGAAGTACCGTTCTT
GTGATAAGTAGATACAAAAGTTGTAGTGTTTTACCAAAACAAAAACAAAA
ATCGAAATATTTTTTTGTGTGCACACCACAGATTAAATAATAATAATAAT
AATAAAATAAAATAAAACATTTGGCACTAAATAAATAAAACGTATCGATG
GTGGCACACTGCAATTGTGTTTTCTATTAATAGACGAATCGTCATTTCGT
GATAAAATGAGCCTCCCCGCGTCGTTTCCGTCGTCTAGAGGGTTCGCGTG
CGCAATCCCGGGCACTCAATTGGAATTTCAAAGTTTGGTATGACCCATGC
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Coding sequence (CDS) from alignment at H-elongata_contig12492:2354..2953+

>mRNA_H-elongata_contig12492.1879.1 ID=mRNA_H-elongata_contig12492.1879.1|Name=mRNA_H-elongata_contig12492.1879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig12492:2354..2953+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCACCTTCTTTCCATCGGAAGGCTGGAGACCATTTCGTTATATTC
AAAATTCCTTGTCGCCAGAGCCACGCAAGGAATCGTTCGTCCCTTTTGTG
ATACCAGGGTATGTCGTATCGGCCTTAATCGTCCAGTCCCCTTTGAAGAG
CTCGCTCGGAGCTTCCATGTTGCCTCCTTCACCCCGATGGTTCACCTTCT
TTCCATCGGAAGGCTGGAGACCATTTCGTTATATTCAAAATTCCTTGTCG
CCAGAGCCACGCAAGGAATCGTTCGTCCCTTTTGTGATACCAGGGTATGT
CGTATCGGCCTTAATCGTCCAGTCCCCTTTGAAGAGCTCGCTCGGAGCTT
CCATGTTGCCTCCTTCACCCCGGTTTTACCAAAACAAAAACAAAAATCGA
AATATTTTTTTGTGTGCACACCACAGATTAAATAAGTTTTACCAAAACAA
AAACAAAAATCGAAATATTTTTTTGTGTGCACACCACAGATTAAATAA
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