prot_H-elongata_contig124906.1877.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig124906.1877.1
Unique Nameprot_H-elongata_contig124906.1877.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.210e-11
Identity = 51/119 (42.86%), Postives = 58/119 (48.74%), Query Frame = 0 
Query:    1 VLGPKYHPLKPGAWRHASPVGGGDHWVSPS-----PKVEALSTDDPPQQPQSSSRRHTLRV---GLANGDS---------SG--------------SIALFMMMGASLQPVPRVPAGNV 88
            VLGPKYHPLK GAW HASP+G  + W  P      P       D PP +  +  RR    V   G    DS         SG              ++ALFMMMGA+LQPV RVPAGNV
Sbjct:  364 VLGPKYHPLKQGAWTHASPLG--NDWTPPDAVRGDPAGATGQKDRPPNRLFTRRRRPGDDVTTHGEIAADSXXXXXXXXGSGRPSSWRQEGRGIDDNLALFMMMGAALQPVARVPAGNV 480
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BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Match: A0A836CNB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.520e-6
Identity = 34/90 (37.78%), Postives = 40/90 (44.44%), Query Frame = 0 
Query:    1 VLGPKYHPLKPGAWRHASPVGGGDHWVSPSPKVEALSTDDPPQQPQSSSRRHTLRVGLANGDSSGS--IALFMMMGASLQPVPRVPAGNV 88
            +LGPKYHPL+PG  RH S +G                                   G   GD+ GS  +AL+MMMG  L PVP V AGNV
Sbjct:  306 ILGPKYHPLRPGQNRHVSTLG-----------------------------------GPGEGDAGGSAPLALYMMMGTGLHPVPSVAAGNV 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE7.210e-1142.86EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CNB0_9STRA1.520e-637.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124906contigH-elongata_contig124906:1154..1417 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124906.1877.1mRNA_H-elongata_contig124906.1877.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig124906 1154..1418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig124906.1877.1 ID=prot_H-elongata_contig124906.1877.1|Name=mRNA_H-elongata_contig124906.1877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
VLGPKYHPLKPGAWRHASPVGGGDHWVSPSPKVEALSTDDPPQQPQSSSR
RHTLRVGLANGDSSGSIALFMMMGASLQPVPRVPAGNV
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