mRNA_H-elongata_contig124906.1877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124906.1877.1
Unique NamemRNA_H-elongata_contig124906.1877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.210e-11
Identity = 51/119 (42.86%), Postives = 58/119 (48.74%), Query Frame = 1 
Query:    1 VLGPKYHPLKPGAWRHASPVGGGDHWVSPS-----PKVEALSTDDPPQQPQSSSRRHTLRV---GLANGDS---------SG--------------SIALFMMMGASLQPVPRVPAGNV 264
            VLGPKYHPLK GAW HASP+G  + W  P      P       D PP +  +  RR    V   G    DS         SG              ++ALFMMMGA+LQPV RVPAGNV
Sbjct:  364 VLGPKYHPLKQGAWTHASPLG--NDWTPPDAVRGDPAGATGQKDRPPNRLFTRRRRPGDDVTTHGEIAADSXXXXXXXXGSGRPSSWRQEGRGIDDNLALFMMMGAALQPVARVPAGNV 480
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BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Match: A0A836CNB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.520e-6
Identity = 34/90 (37.78%), Postives = 40/90 (44.44%), Query Frame = 1 
Query:    1 VLGPKYHPLKPGAWRHASPVGGGDHWVSPSPKVEALSTDDPPQQPQSSSRRHTLRVGLANGDSSGS--IALFMMMGASLQPVPRVPAGNV 264
            +LGPKYHPL+PG  RH S +G                                   G   GD+ GS  +AL+MMMG  L PVP V AGNV
Sbjct:  306 ILGPKYHPLRPGQNRHVSTLG-----------------------------------GPGEGDAGGSAPLALYMMMGTGLHPVPSVAAGNV 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124906.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE7.210e-1142.86EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CNB0_9STRA1.520e-637.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124906contigH-elongata_contig124906:1154..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog2880.D7G3I9
Preferred nameEFTUD1
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0467@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.76632-CDS-H-elongata_contig124906:1153..14171622929737.76632-CDS-H-elongata_contig124906:1153..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124906 1154..1417 +
1691679138.5853915-CDS-H-elongata_contig124906:1153..14171691679138.5853915-CDS-H-elongata_contig124906:1153..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124906 1154..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124906.1877.1prot_H-elongata_contig124906.1877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124906 1154..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124906.1877.1

>prot_H-elongata_contig124906.1877.1 ID=prot_H-elongata_contig124906.1877.1|Name=mRNA_H-elongata_contig124906.1877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
VLGPKYHPLKPGAWRHASPVGGGDHWVSPSPKVEALSTDDPPQQPQSSSR
RHTLRVGLANGDSSGSIALFMMMGASLQPVPRVPAGNV
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mRNA from alignment at H-elongata_contig124906:1154..1418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124906.1877.1 ID=mRNA_H-elongata_contig124906.1877.1|Name=mRNA_H-elongata_contig124906.1877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=265bp|location=Sequence derived from alignment at H-elongata_contig124906:1154..1418+ (Himanthalia elongata Himel1 dioecious)
GTGCTCGGGCCGAAGTACCACCCGTTGAAGCCCGGGGCGTGGAGACACGC
TTCCCCGGTGGGTGGAGGTGACCACTGGGTTTCCCCCTCTCCCAAGGTCG
AAGCTCTTTCGACAGACGATCCACCGCAGCAGCCTCAGAGCTCAAGCCGA
CGCCACACCCTTCGAGTTGGCCTTGCCAATGGTGACAGCAGCGGAAGCAT
CGCCCTGTTCATGATGATGGGGGCCTCGTTGCAGCCCGTGCCTCGAGTGC
CCGCCGGGAACGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig124906:1154..1418+

>mRNA_H-elongata_contig124906.1877.1 ID=mRNA_H-elongata_contig124906.1877.1|Name=mRNA_H-elongata_contig124906.1877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig124906:1154..1418+ (Himanthalia elongata Himel1 dioecious)
GTGCTCGGGCCGAAGTACCACCCGTTGAAGCCCGGGGCGTGGAGACACGC
TTCCCCGGTGGGTGGAGGTGACCACTGGGTTTCCCCCTCTCCCAAGGTCG
AAGCTCTTTCGACAGACGATCCACCGCAGCAGCCTCAGAGCTCAAGCCGA
CGCCACACCCTTCGAGTTGGCCTTGCCAATGGTGACAGCAGCGGAAGCAT
CGCCCTGTTCATGATGATGGGGGCCTCGTTGCAGCCCGTGCCTCGAGTGC
CCGCCGGGAACGTCGTGCTCGGGCCGAAGTACCACCCGTTGAAGCCCGGG
GCGTGGAGACACGCTTCCCCGGTGGGTGGAGGTGACCACTGGGTTTCCCC
CTCTCCCAAGGTCGAAGCTCTTTCGACAGACGATCCACCGCAGCAGCCTC
AGAGCTCAAGCCGACGCCACACCCTTCGAGTTGGCCTTGCCAATGGTGAC
AGCAGCGGAAGCATCGCCCTGTTCATGATGATGGGGGCCTCGTTGCAGCC
CGTGCCTCGAGTGCCCGCCGGGAACGTC
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