mRNA_H-elongata_contig124894.1876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124894.1876.1
Unique NamemRNA_H-elongata_contig124894.1876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124894.1876.1 vs. uniprot
Match: D8LJY4_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 9.100e-12
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 SGLADRHLVVVVGEKELCRGGDPAPTPEMEGFAWAYDLSSTEAS 132
            +GLADRHLVV VGE+E+CRGG PAP P  EG +WAYDL S++++
Sbjct:  414 AGLADRHLVVFVGEQEVCRGGVPAPAPPTEGSSWAYDLWSSDSA 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124894.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJY4_ECTSI9.100e-1265.91C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124894contigH-elongata_contig124894:1236..1833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.6863623-CDS-H-elongata_contig124894:1237..12611622929737.6863623-CDS-H-elongata_contig124894:1237..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124894 1238..1261 -
1691679138.566716-CDS-H-elongata_contig124894:1237..12611691679138.566716-CDS-H-elongata_contig124894:1237..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124894 1238..1261 -
1622929737.710368-CDS-H-elongata_contig124894:1581..18331622929737.710368-CDS-H-elongata_contig124894:1581..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124894 1582..1833 -
1691679138.5756-CDS-H-elongata_contig124894:1581..18331691679138.5756-CDS-H-elongata_contig124894:1581..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124894 1582..1833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124894.1876.1prot_H-elongata_contig124894.1876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124894 1238..1833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124894.1876.1

>prot_H-elongata_contig124894.1876.1 ID=prot_H-elongata_contig124894.1876.1|Name=mRNA_H-elongata_contig124894.1876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
SGLADRHLVVVVGEKELCRGGDPAPTPEMEGFAWAYDLSSTEASDIAQGA
TGGVAATAATAAAGDADDASREEGEGYTEGVSEERAAVEVST
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mRNA from alignment at H-elongata_contig124894:1236..1833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124894.1876.1 ID=mRNA_H-elongata_contig124894.1876.1|Name=mRNA_H-elongata_contig124894.1876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=598bp|location=Sequence derived from alignment at H-elongata_contig124894:1236..1833- (Himanthalia elongata Himel1 dioecious)
TCGGGGCTTGCGGACAGGCACCTAGTGGTTGTTGTGGGGGAAAAGGAGCT
TTGTCGGGGCGGTGACCCAGCCCCGACTCCCGAGATGGAAGGTTTTGCCT
GGGCGTACGATTTGTCGTCCACGGAGGCCTCAGACATTGCCCAAGGTGCT
ACTGGCGGGGTTGCCGCCACTGCAGCAACTGCTGCTGCTGGCGATGCTGA
TGATGCTTCGAGAGAAGAGGGAGAGGGTTACACCGAAGGCGTTAGCGAAG
AGGTTTGTATGGTACGGTACGAGATTTTCTCGTCGTTTTCGAGAGCTCTC
TTTTCCGCCCCCACTCTTCCATCTATCTATACACGTAGTTCTCGGGTACA
GCATGGACACGTACAGCTGATAGGTCGAGGGTCCTGACCGTGTTTAGATG
GATGTTGCTTCCAATCGCTTATCTATATTAATTGTGTGGACGCACCGTCG
GCTGAACGCCTGATCTGATCTGATCTGATATGCTATTTTGCGTTTGACTT
ACCGAATCGCTATGAACCCCCGCTCCCAACCCCCTTTCTGTGTCCCTCTG
CCACTTCTCCTTGCCCGGAAAGCGCGCCGCAGTAGAGGTGAGCACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig124894:1236..1833-

>mRNA_H-elongata_contig124894.1876.1 ID=mRNA_H-elongata_contig124894.1876.1|Name=mRNA_H-elongata_contig124894.1876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig124894:1236..1833- (Himanthalia elongata Himel1 dioecious)
TCGGGGCTTGCGGACAGGCACCTAGTGGTTGTTGTGGGGGAAAAGGAGCT
TTGTCGGGGCGGTGACCCAGCCCCGACTCCCGAGATGGAAGGTTTTGCCT
GGGCGTACGATTTGTCGTCCACGGAGGCCTCAGACATTGCCCAAGGTGCT
ACTGGCGGGGTTGCCGCCACTGCAGCAACTGCTGCTGCTGGCGATGCTGA
TGATGCTTCGAGAGAAGAGGGAGAGGGTTACACCGAAGGCGTTAGCGAAG
AGTCGGGGCTTGCGGACAGGCACCTAGTGGTTGTTGTGGGGGAAAAGGAG
CTTTGTCGGGGCGGTGACCCAGCCCCGACTCCCGAGATGGAAGGTTTTGC
CTGGGCGTACGATTTGTCGTCCACGGAGGCCTCAGACATTGCCCAAGGTG
CTACTGGCGGGGTTGCCGCCACTGCAGCAACTGCTGCTGCTGGCGATGCT
GATGATGCTTCGAGAGAAGAGGGAGAGGGTTACACCGAAGGCGTTAGCGA
AGAGCGCGCCGCAGTAGAGGTGAGCACGCGCGCCGCAGTAGAGGTGAGCA
CG
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