mRNA_H-elongata_contig124876.1874.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124876.1874.1
Unique NamemRNA_H-elongata_contig124876.1874.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.160e-40
Identity = 95/193 (49.22%), Postives = 104/193 (53.89%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDEXXXXXXXXKLENVRGRKAELGGDGAVAAASGSLSKAGAPGGGDGVE---------------------------EEDASEEDRNSDGGSVGGFLDVDTYAFVPAAEEISSAQAAPCVRFLLD 498
            VIHVGELFGDSV MTPGQ+PWGRTTS+ECQEELASKFHCILKVP+PSWPHSRDTLTVWKRH+F  I Y +D+   X   X             G         S  K G  G G G                                +  +D  S  G   G LDVD YAFVP  E +  AQAAPC RFLLD
Sbjct:  228 VIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDDDDSDXNEAXXXXXXXXXXXXAQGKEPGEKGKNSSPK-GVSGDGHGXXXXXRKGXXXXXXXXXXXXXXXXXXXXXRSSSGSDDFGSIEGLPIGMLDVDMYAFVPEDERMPCAQAAPCARFLLD 419          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.560e-39
Identity = 99/193 (51.30%), Postives = 108/193 (55.96%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDEXXXXXXXXKLENVRGRKAELGGDGAVAA-----------------ASGSLSKAGAPGGGDG----------VEEEDASEEDRNSDGGSVGGFLDVDTYAFVPAAEEISSAQAAPCVRFLLD 498
            VIHVGELFGDSV MTPGQ+PWGRTTS+ECQEELASKFHCILKVP+PSWPHSRDTLTVWKRH+F  I Y +  XXXXXXXX                                     A+G   K G    G G               +  +D  S  G   G LDVD YAFVP  E +  AQAAPC RFLLD
Sbjct:  227 VIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDREANGKGRKGGKKAEGSGKXXXXXXXXXXXXXSSGSDDFGSIEGLPIGMLDVDMYAFVPEDETMPCAQAAPCARFLLD 419          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A7S2YLX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLX6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.880e-18
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
            ++HVGE+FGD++ M  G  PWGR++S   Q++LA++FHCILK+ +PSW H RD+LTVWKR     I +  +E
Sbjct:   29 IVHVGEIFGDTLSMDQG--PWGRSSSPMFQQQLAAEFHCILKLKLPSWLHVRDSLTVWKRSEVCSIIFASEE 98          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: B7G708_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G708_PHATC)

HSP 1 Score: 89.4 bits (220), Expect = 5.090e-18
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR-HAFSVIHYGEDE 216
            VIHVGEL+GD++ M   QAPWGR++S E Q++LA++FHC+L++ +P+W H RDTL+VWKR    +++   EDE
Sbjct:  195 VIHVGELYGDTLSME--QAPWGRSSSPEFQQQLAAQFHCVLEMQLPNWLHVRDTLSVWKRSQTCAIVFAAEDE 265          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1Z5K817_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K817_FISSO)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-15
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
            VIHVGELF DS  ++  QAPWGR++S E Q+ LAS +HC+L   +P+W H+RD+L+VW+R     + +  DE
Sbjct:  226 VIHVGELFSDS-SLSMDQAPWGRSSSSEFQQLLASDYHCLLHTHLPNWLHTRDSLSVWRRSRTCALVFAADE 296          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: K3WRM0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRM0_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 2.300e-15
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR 180
            VIHVGELFG SV + PG  PWGRT+++E Q  LAS FH +L+VP+PSW  S DTLTVWKR
Sbjct:  123 VIHVGELFGQSVCL-PG--PWGRTSAQEFQVHLASVFHKVLQVPLPSWHSSVDTLTVWKR 179          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A6U3Q3X2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q3X2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.020e-15
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKR-HAFSVIHYGEDE 216
            +IHVGEL+ D+  ++  QAPWGR++S E Q+ LAS+FHCILK  + +W H +DT++VWKR    S++  G+D+
Sbjct:  274 IIHVGELYTDNT-LSLEQAPWGRSSSPEFQQRLASEFHCILKAKLTNWLHVKDTISVWKRSERCSIVFQGDDD 345          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1E7FW58_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW58_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.530e-15
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
            VIHVGEL      +   QAPWGR++S E Q+ LAS+FHCI K+ +P+W H RD+++VWKR     +++ +D+
Sbjct:  242 VIHVGELAFLDSSLNLDQAPWGRSSSPEFQQRLASEFHCIAKIQLPNWLHVRDSISVWKRSELCEMYFVDDD 313          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A1Z5KHV0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHV0_FISSO)

HSP 1 Score: 79.0 bits (193), Expect = 2.880e-14
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVIHYGEDE 216
            +IHVGELF DS  ++  QAPWGR++S E Q+ LAS +HC+L + +P+W H+RD+++VW+R     + +  +E
Sbjct:  217 IIHVGELFSDS-SLSIDQAPWGRSSSSEFQQLLASDYHCLLHMRLPNWLHTRDSISVWRRSRTCSLVFAAEE 287          
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Match: A0A8K1CRB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRB1_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 2.970e-14
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPHSRDTLTVWKRHAFSVI 198
            VIHVGELFG +V + PG  PWGRT+S E Q  LAS +H +L+VP+PSW  S DTLTVWKR   S++
Sbjct:  235 VIHVGELFGQTVCL-PG--PWGRTSSSEFQIHLASVYHKVLQVPLPSWHSSIDTLTVWKRTKTSIM 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124876.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFK6_ECTSI2.160e-4049.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT97_9PHAE1.560e-3951.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YLX6_9STRA1.880e-1851.39Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
B7G708_PHATC5.090e-1853.42Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K817_FISSO1.710e-1550.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
K3WRM0_GLOUD2.300e-1566.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U3Q3X2_9STRA4.020e-1549.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FW58_9STRA9.530e-1547.22Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5KHV0_FISSO2.880e-1445.83Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A8K1CRB1_PYTOL2.970e-1460.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124876contigH-elongata_contig124876:403..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue4.1e-36
Seed eggNOG ortholog2880.D8LFK6
EggNOG OGs29WS3@1,2RXQ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001860.2
Exons2
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.5491154-CDS-H-elongata_contig124876:402..5281622929737.5491154-CDS-H-elongata_contig124876:402..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124876 403..528 +
1691679138.5280156-CDS-H-elongata_contig124876:402..5281691679138.5280156-CDS-H-elongata_contig124876:402..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124876 403..528 +
1622929737.5623446-CDS-H-elongata_contig124876:1067..14511622929737.5623446-CDS-H-elongata_contig124876:1067..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124876 1068..1451 +
1691679138.537384-CDS-H-elongata_contig124876:1067..14511691679138.537384-CDS-H-elongata_contig124876:1067..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124876 1068..1451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124876.1874.1prot_H-elongata_contig124876.1874.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124876 403..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124876.1874.1

>prot_H-elongata_contig124876.1874.1 ID=prot_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
VIHVGELFGDSVGMTPGQAPWGRTTSRECQEELASKFHCILKVPIPSWPH
SRDTLTVWKRHAFSVIHYGEDEEDDEEEEEKLENVRGRKAELGGDGAVAA
ASGSLSKAGAPGGGDGVEEEDASEEDRNSDGGSVGGFLDVDTYAFVPAAE
EISSAQAAPCVRFLLDPRG*
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mRNA from alignment at H-elongata_contig124876:403..1451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124876.1874.1 ID=mRNA_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-elongata_contig124876:403..1451+ (Himanthalia elongata Himel1 dioecious)
GTAATACACGTGGGCGAGCTCTTCGGCGACTCGGTGGGCATGACGCCGGG TCAGGCGCCTTGGGGTCGAACGACCTCTCGGGAGTGCCAGGAAGAATTGG CGTCCAAATTTCACTGCATTCTCAAGGTTCGTCGGAAATAACGACACAAG CACATATACACACACACACACCTAACCGCCGGTTTCGCGAAGCTGTAGTA ACTATCTACTAGTGTTGCGTATCGATTGGGTTTCGGAATCGATACGATAT CGATATCGATATAGTAGCGAGTGAAATCGCCCCCCCCCCGGCTGGTGAAG GGGGCCCGCCAAGGAAAAAAAAAATGTGCAATTTCGCTTCATTTCCCATC ACAATCGCCGTTAGATAGCCCTTCGAAACGGACTGCTCACAGCCACGTTT GTGCCAAAAAAGCGCATGGAAAACATAAAAAAAAGGAAATTTATCTTAGA CCCAAAGGGACGGCCTGTATGTGTCGTTTGCCGTGAAGTGGTCCCGCTCA CGGCGGGCAACGCCTCCAACCTTGAAGCTCACTACAAGTCGCCAAGAGTG TCTGATCAAACTGAATGCAAGAAGAGGCTCGGTGAGGCAAAGACGCGCGA GACACGATCCGCTCTAACCTACCGGATCATTATATCGGTTGTTTTCGTGT GTGACGGAGATGCAGGTGCCCATCCCGAGCTGGCCACACTCTCGCGACAC GCTAACGGTGTGGAAGAGACACGCTTTCTCTGTGATTCACTACGGTGAGG ACGAGGAGGATGACGAGGAAGAGGAAGAAAAACTCGAAAACGTTCGTGGC CGAAAGGCGGAATTAGGAGGCGATGGTGCTGTTGCAGCAGCGTCGGGGAG TTTGAGCAAGGCAGGAGCCCCGGGTGGCGGGGACGGGGTTGAGGAGGAGG ACGCCTCGGAGGAAGATCGTAACAGCGACGGTGGCTCGGTGGGCGGGTTC CTCGATGTGGACACATACGCGTTCGTGCCCGCTGCGGAAGAGATTTCGTC CGCACAAGCGGCACCGTGCGTGCGATTCCTGCTAGACCCGCGAGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig124876:403..1451+

>mRNA_H-elongata_contig124876.1874.1 ID=mRNA_H-elongata_contig124876.1874.1|Name=mRNA_H-elongata_contig124876.1874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig124876:403..1451+ (Himanthalia elongata Himel1 dioecious)
GTAATACACGTGGGCGAGCTCTTCGGCGACTCGGTGGGCATGACGCCGGG
TCAGGCGCCTTGGGGTCGAACGACCTCTCGGGAGTGCCAGGAAGAATTGG
CGTCCAAATTTCACTGCATTCTCAAGGTAATACACGTGGGCGAGCTCTTC
GGCGACTCGGTGGGCATGACGCCGGGTCAGGCGCCTTGGGGTCGAACGAC
CTCTCGGGAGTGCCAGGAAGAATTGGCGTCCAAATTTCACTGCATTCTCA
AGGTGCCCATCCCGAGCTGGCCACACTCTCGCGACACGCTAACGGTGTGG
AAGAGACACGCTTTCTCTGTGATTCACTACGGTGAGGACGAGGAGGATGA
CGAGGAAGAGGAAGAAAAACTCGAAAACGTTCGTGGCCGAAAGGCGGAAT
TAGGAGGCGATGGTGCTGTTGCAGCAGCGTCGGGGAGTTTGAGCAAGGCA
GGAGCCCCGGGTGGCGGGGACGGGGTTGAGGAGGAGGACGCCTCGGAGGA
AGATCGTAACAGCGACGGTGGCTCGGTGGGCGGGTTCCTCGATGTGGACA
CATACGCGTTCGTGCCCGCTGCGGAAGAGATTTCGTCCGCACAAGCGGCA
CCGTGCGTGCGATTCCTGCTAGACCCGCGAGGATAAGTGCCCATCCCGAG
CTGGCCACACTCTCGCGACACGCTAACGGTGTGGAAGAGACACGCTTTCT
CTGTGATTCACTACGGTGAGGACGAGGAGGATGACGAGGAAGAGGAAGAA
AAACTCGAAAACGTTCGTGGCCGAAAGGCGGAATTAGGAGGCGATGGTGC
TGTTGCAGCAGCGTCGGGGAGTTTGAGCAAGGCAGGAGCCCCGGGTGGCG
GGGACGGGGTTGAGGAGGAGGACGCCTCGGAGGAAGATCGTAACAGCGAC
GGTGGCTCGGTGGGCGGGTTCCTCGATGTGGACACATACGCGTTCGTGCC
CGCTGCGGAAGAGATTTCGTCCGCACAAGCGGCACCGTGCGTGCGATTCC
TGCTAGACCCGCGAGGATAA
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