mRNA_H-elongata_contig124864.1873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124864.1873.1
Unique NamemRNA_H-elongata_contig124864.1873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.080e-14
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 RIVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQV 123
            R++LAVGHSARP+YERLLD+GVGL  KGIAVG R+EHPQV
Sbjct:  480 RVILAVGHSARPLYERLLDSGVGLEAKGIAVGFRIEHPQV 519
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 RIVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            R++LAVGHSARP+YERLLD+GV L  KGIAVG R+EHPQ
Sbjct:  349 RVILAVGHSARPLYERLLDSGVSLEAKGIAVGFRIEHPQ 387
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A061RI35_9CHLO (Oxidoreductase electron carrier n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RI35_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.330e-10
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 KRIVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQVK 126
            K +VLA+GHSARP+YE+L  AGV L PK  AVG R+EHPQ K
Sbjct:  361 KDVVLAIGHSARPLYEQLQAAGVSLTPKSFAVGFRIEHPQEK 402
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A3N2MG19_9BACT (FAD-binding protein n=1 Tax=Muribaculaceae bacterium Isolate-104 (HZI) TaxID=2486471 RepID=A0A3N2MG19_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.120e-9
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            ++LA GHSAR VYE ++DAG+   PKGIAVG+R+EHPQ
Sbjct:  243 VILATGHSARDVYEHIVDAGIEAEPKGIAVGVRLEHPQ 280
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A4Q0J3W2_9BACT (FAD-binding protein n=2 Tax=Bacteroidales TaxID=171549 RepID=A0A4Q0J3W2_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-9
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            ++LA GHSAR VY  L++AG+ L+PKGIAVG+R+EHPQ
Sbjct:  249 VILATGHSARDVYTSLMEAGIELQPKGIAVGVRLEHPQ 286
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A4Q0J008_9BACT (FAD-binding protein n=1 Tax=Muribaculaceae bacterium Isolate-002 (NCI) TaxID=2489215 RepID=A0A4Q0J008_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-9
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            +++A GHSAR  Y  LLD+GV L PKGIA+G+R+EHPQ
Sbjct:  248 VIIATGHSARDTYRMLLDSGVALEPKGIAIGVRLEHPQ 285
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BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A1Q6EDZ7_9BACT (FAD-binding protein n=1 Tax=Bacteroidales bacterium 52_46 TaxID=1897040 RepID=A0A1Q6EDZ7_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-9
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            ++LA GHSAR  Y  LLD+GV + PKGIA+G+R+EHPQ
Sbjct:  247 VILATGHSARDTYRMLLDSGVAIEPKGIAIGVRLEHPQ 284
[Close]
BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A3N2N9Z6_9BACT (FAD-binding protein n=1 Tax=Muribaculaceae bacterium Isolate-110 (HZI) TaxID=2486473 RepID=A0A3N2N9Z6_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-9
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            ++LA GHSAR +Y  LLD+GV L PKG+A+G+R+EHPQ
Sbjct:  246 VILATGHSARDIYTMLLDSGVTLEPKGLAIGVRLEHPQ 283
[Close]
BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A4Y9J154_9BACT (FAD-binding protein n=1 Tax=Barnesiella sp. WM24 TaxID=2558278 RepID=A0A4Y9J154_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.900e-9
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            ++LA GHSAR  YE LL+ G+ L PKGIAVG+R+EHPQ
Sbjct:  243 VILATGHSARDTYEMLLNHGISLEPKGIAVGVRLEHPQ 280
[Close]
BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Match: A0A4S4GMK9_9BACT (FAD-binding protein (Fragment) n=1 Tax=Muribaculaceae bacterium TaxID=2498093 RepID=A0A4S4GMK9_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 6.820e-9
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 IVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQ 120
            +++A GHSAR VYE L++ GV L PKGIAVG R+EHPQ
Sbjct:  244 VIMATGHSARDVYEMLIEHGVTLEPKGIAVGCRLEHPQ 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124864.1873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX72_9PHAE5.080e-1480.00FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7FIX4_ECTSI1.150e-1276.92FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A061RI35_9CHLO2.330e-1066.67Oxidoreductase electron carrier n=1 Tax=Tetraselmi... [more]
A0A3N2MG19_9BACT1.120e-965.79FAD-binding protein n=1 Tax=Muribaculaceae bacteri... [more]
A0A4Q0J3W2_9BACT2.080e-965.79FAD-binding protein n=2 Tax=Bacteroidales TaxID=17... [more]
A0A4Q0J008_9BACT2.850e-963.16FAD-binding protein n=1 Tax=Muribaculaceae bacteri... [more]
A0A1Q6EDZ7_9BACT2.850e-963.16FAD-binding protein n=1 Tax=Bacteroidales bacteriu... [more]
A0A3N2N9Z6_9BACT2.850e-963.16FAD-binding protein n=1 Tax=Muribaculaceae bacteri... [more]
A0A4Y9J154_9BACT3.900e-965.79FAD-binding protein n=1 Tax=Barnesiella sp. WM24 T... [more]
A0A4S4GMK9_9BACT6.820e-965.79FAD-binding protein (Fragment) n=1 Tax=Muribaculac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124864contigH-elongata_contig124864:1509..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog2880.D7FIX4
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.4725885-CDS-H-elongata_contig124864:1508..16341622929737.4725885-CDS-H-elongata_contig124864:1508..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124864 1509..1634 +
1691679138.5182679-CDS-H-elongata_contig124864:1508..16341691679138.5182679-CDS-H-elongata_contig124864:1508..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124864 1509..1634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124864.1873.1prot_H-elongata_contig124864.1873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124864 1509..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124864.1873.1

>prot_H-elongata_contig124864.1873.1 ID=prot_H-elongata_contig124864.1873.1|Name=mRNA_H-elongata_contig124864.1873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
KRIVLAVGHSARPVYERLLDAGVGLRPKGIAVGLRVEHPQVK
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mRNA from alignment at H-elongata_contig124864:1509..1634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124864.1873.1 ID=mRNA_H-elongata_contig124864.1873.1|Name=mRNA_H-elongata_contig124864.1873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig124864:1509..1634+ (Himanthalia elongata Himel1 dioecious)
AAAAGGATTGTCCTGGCTGTGGGCCACAGCGCGAGGCCCGTATATGAGAG
GCTGCTAGATGCCGGAGTGGGGCTGCGACCCAAGGGCATCGCCGTGGGCC
TCCGCGTGGAGCATCCCCAGGTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig124864:1509..1634+

>mRNA_H-elongata_contig124864.1873.1 ID=mRNA_H-elongata_contig124864.1873.1|Name=mRNA_H-elongata_contig124864.1873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig124864:1509..1634+ (Himanthalia elongata Himel1 dioecious)
AAAAGGATTGTCCTGGCTGTGGGCCACAGCGCGAGGCCCGTATATGAGAG
GCTGCTAGATGCCGGAGTGGGGCTGCGACCCAAGGGCATCGCCGTGGGCC
TCCGCGTGGAGCATCCCCAGGTGAAGAAAAGGATTGTCCTGGCTGTGGGC
CACAGCGCGAGGCCCGTATATGAGAGGCTGCTAGATGCCGGAGTGGGGCT
GCGACCCAAGGGCATCGCCGTGGGCCTCCGCGTGGAGCATCCCCAGGTGA
AG
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