mRNA_H-elongata_contig124850.1872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124850.1872.1
Unique NamemRNA_H-elongata_contig124850.1872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: D7FLZ3_ECTSI (GTP_CH_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ3_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.530e-16
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    4 LQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            L+WG+EDPE+RGPV+ATTRHPTQRNAIGAHSGSYC+YR
Sbjct:   87 LKWGEEDPEQRGPVMATTRHPTQRNAIGAHSGSYCVYR 124
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A4D9CXZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXZ5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.110e-15
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            P++WG+EDPE RGP+VATTRH +QRNAIGAHSGSYC+Y+
Sbjct:   45 PMKWGEEDPEVRGPIVATTRHQSQRNAIGAHSGSYCIYK 83
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: K8YW60_NANGC (Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW60_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 6.260e-15
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            P++WG+EDPE RGP+VATTRH +QRNAIGAHSGSYC+Y+
Sbjct:   45 PMKWGEEDPEVRGPIVATTRHQSQRNAIGAHSGSYCIYK 83
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: W7T706_9STRA (Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T706_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.540e-15
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            P++WG+EDPE RGP+VATTRH +QRNAIGAHSGSYC+Y+
Sbjct:   68 PMKWGEEDPEVRGPIVATTRHQSQRNAIGAHSGSYCIYK 106
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A835YXC9_9STRA (GTP cyclohydrolase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-14
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            PL+W +EDPE RGPVVATT+HP QRNAIGAHSGSYC+Y+
Sbjct:   54 PLKWEEEDPELRGPVVATTQHPMQRNAIGAHSGSYCIYK 92
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A6V1R1S8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R1S8_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 2.700e-13
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    4 LQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLY 114
            L+WG+ DPE+RGPV+ATT+H  QRNAIGAHSGSYC+Y
Sbjct:   20 LKWGEADPERRGPVIATTKHAAQRNAIGAHSGSYCIY 56
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A0M0K9J5_9EUKA (Gtp cyclohydrolase ii n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9J5_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 3.370e-12
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYRVCTL 129
            PL WG  DP+KRGPVVAT   P  RNAIGAHSG+YC+YR   L
Sbjct:   26 PLDWGNRDPKKRGPVVATVSKPGMRNAIGAHSGTYCVYRAVAL 68
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A7R9WIT0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIT0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.910e-12
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLY 114
            P+ WG  DP  RGPV+ T RH +QRNAIGAHSGSYC+Y
Sbjct:   59 PISWGHPDPLVRGPVICTVRHMSQRNAIGAHSGSYCIY 96
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A7S2GXU1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXU1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLY 114
            P+ WG  DP+ RGPV+ T RH +QRNAIGAHSGSYC+Y
Sbjct:   50 PISWGHPDPKVRGPVICTVRHSSQRNAIGAHSGSYCIY 87
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BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Match: A0A7S2SSD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSD0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYR 117
            PL+WG ++  +RGPV+ATTRH  QRNAIGAHSGSYC+Y+
Sbjct:   78 PLKWGAKNARERGPVLATTRHTEQRNAIGAHSGSYCIYK 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124850.1872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ3_ECTSI1.530e-1686.84GTP_CH_N domain-containing protein n=1 Tax=Ectocar... [more]
A0A4D9CXZ5_9STRA6.110e-1576.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YW60_NANGC6.260e-1576.92Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gadi... [more]
W7T706_9STRA6.540e-1576.92Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gadi... [more]
A0A835YXC9_9STRA1.660e-1479.49GTP cyclohydrolase N terminal-domain-containing pr... [more]
A0A6V1R1S8_HETAK2.700e-1375.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0M0K9J5_9EUKA3.370e-1267.44Gtp cyclohydrolase ii n=1 Tax=Chrysochromulina tob... [more]
A0A7R9WIT0_9STRA4.910e-1268.42Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S2GXU1_9STRA1.170e-1168.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2SSD0_9STRA1.170e-1169.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124850contigH-elongata_contig124850:482..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog2880.D7FLZ3
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
Ec32 ortholog descriptionGTP cyclohydrolase N-terminal
Ec32 orthologEc-22_000270.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.4081838-CDS-H-elongata_contig124850:481..6161622929737.4081838-CDS-H-elongata_contig124850:481..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124850 482..616 -
1691679138.5089662-CDS-H-elongata_contig124850:481..6161691679138.5089662-CDS-H-elongata_contig124850:481..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124850 482..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124850.1872.1prot_H-elongata_contig124850.1872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124850 482..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124850.1872.1

>prot_H-elongata_contig124850.1872.1 ID=prot_H-elongata_contig124850.1872.1|Name=mRNA_H-elongata_contig124850.1872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
PLQWGQEDPEKRGPVVATTRHPTQRNAIGAHSGSYCLYRVCTLV*
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mRNA from alignment at H-elongata_contig124850:482..616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124850.1872.1 ID=mRNA_H-elongata_contig124850.1872.1|Name=mRNA_H-elongata_contig124850.1872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig124850:482..616- (Himanthalia elongata Himel1 dioecious)
CCGCTGCAGTGGGGCCAGGAAGATCCCGAGAAGCGGGGGCCGGTTGTGGC
TACAACCCGACACCCCACGCAGAGAAACGCCATCGGCGCCCACAGCGGCA
GCTACTGCCTTTATCGGGTATGTACTCTAGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig124850:482..616-

>mRNA_H-elongata_contig124850.1872.1 ID=mRNA_H-elongata_contig124850.1872.1|Name=mRNA_H-elongata_contig124850.1872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig124850:482..616- (Himanthalia elongata Himel1 dioecious)
CCGCTGCAGTGGGGCCAGGAAGATCCCGAGAAGCGGGGGCCGGTTGTGGC
TACAACCCGACACCCCACGCAGAGAAACGCCATCGGCGCCCACAGCGGCA
GCTACTGCCTTTATCGGGTATGTACTCTAGTATAGCCGCTGCAGTGGGGC
CAGGAAGATCCCGAGAAGCGGGGGCCGGTTGTGGCTACAACCCGACACCC
CACGCAGAGAAACGCCATCGGCGCCCACAGCGGCAGCTACTGCCTTTATC
GGGTATGTACTCTAGTATAG
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