mRNA_H-elongata_contig12484.1868.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12484.1868.1 vs. uniprot
Match: A0A6H5K7Y3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y3_9PHAE) HSP 1 Score: 406 bits (1044), Expect = 8.040e-116 Identity = 477/1522 (31.34%), Postives = 640/1522 (42.05%), Query Frame = 1
Query: 25 VARILHDEAPRKLSKIMALLAVVNQTMGPS----------------------------------LMEPSAPLLTSAIAKSMRHESAQARKHAAAAAFRLLGDAPEAMRKSATLRSVATTEDEGDAWVPCLLRLCLDDCIGVRVEALRAAKRAVSC--IKRDGTIASWVLGRVKDSSLFQDMDRWRCHQASSTGVASEATARSAFLDVGQLTASQPSPTASKTKKTADREQAINAERVKHAMMAWAVHLSLADFDSLDKSRALPGNKKNAFHACTDKFLSASAKFNHNRSSVRVEAMEAWGMFASTCLRN-----AAKVAELAMRPMMRSVLKEREAVVREAAFSQLTRCVASFPPHSVKHSWRLPEKLRRAGKAGLADFLRRASGVERGADVRHFSARMLSAVLPCAIPALG*STSPCSLRRAGLSLAVELSPIMSTLQNLMQALSAPGPDIATSSIVATA------FPPEAGAPATS------LDALPTWSLIAQAWCGLILWAISEHRAGPFFA---GDGCDNASNAGR---NNSKDQGQDGGAT-------RKTSGGEI----------------EPLSMLLRWLLYDETIAGEET---VEAVVSKDPAAALNSGGLTSATVEYEVTSTSKRGLNDWKWTLLIALVHVLSSLRAPKELREGLKTEPVEDCYVK----TWMKLPVDVPMSFFQTRLKETSEGAESTNGACVECATARDV--QALVLKDLATSVPLWVALLVGVLEKPCH---------------------RHACD-GQPRRECTGCSRDHGRGAERPESGGFHPSAPCSCSVMFRGGRTSSSPESTLAQVLALSPPRSPARLLLTLARGMAPPLTERVEGDVDDETRARLVMSRSSFISTLGRTWCAEAARNLTEW---MPFCASS---SATDDSLHGEFGITL---------LQRHCRSDAPGAAFVSVMNER----------RPDAELLESTADALRSVLKSAGRFLRSPLAEGLATLGK----AMENTCDRGRTCVDDCKIGRKD----DHDRLLGAAPMLTERGSETQHWRDRWTPNHPPASMEEAFGCRAAKLWRDLFVARGRYSP----GFPSLVKKIAKDCAVLAFCS----------GPDEPRQSVVNSSGTTELTQQYVQ--------------GKSEAWGFALSQSQQVPKKRGVNAPVLGEVESPSRCSSRASKGTG-LLSRPPPMECLPIVLAAAQALLSVA-VNADAKDPGNMRTRAWGAALATLAWTLKSSNQAGGR--------------STESGMESWAAAESATSDVLDCLRALRRA-------------DASSGKKTGQRELVVPVDEVSLVAVSQLVAVGLRFSCPTHGTTLY------SGEGRDQIHVKRAA----------VCIAANPAVRHEILEVALCVLIGVRGLRRDLLTSPGTLGTLSPMLEAVLETPSS-IETDSIQSALIDTWNHTFGNL----PGGRAWKKSFPENLHRLLARSAGLTEVRMPPGMTFEAI 3918
VAR+L E ++ K+MAL A+ TM P L+ PS L A+A++MR ES AR+ +A A LLG P AM + R+ E+E WV CLLRLC DD + VR +AL+AA+RAVS ++ + IA+WV+ ++D L Q M+R + ASS A+ TA + D + SP A+ + KT R+ +RVKHA+ WAVHLSLAD SL ++R G KK T F K R V+V+A+E+W MFA + + A KVA + +R + R VLKE+ VVRE A S L R VASFP S+K W K + K GL + LR +G G RH SAR+L+A+LPC L + LR AGL+L EL ++S L+ LM+A +P P+ A S++ A A GA + L+ LPT LIA AWCGL WA+ + A G G A++AG +N G+ G T RK G +PL +LL WLL T V V K + G A + T+ R L WK LL AL+ LS ++++ +D K W+ PVD S F RL AC EC A V Q++ K L + PLW+ LL GVL C R AC G PR E +G + D RG + C S +F P+S LA L+LSP PA+LL +L G +G +E LV++ GR W AEAARNL EW +P S +A G G+T + H R+ AA V V +P L TA+ LR L +A P + K A CD + + DHD L RG + W + + ++E FG AA+LW LF AR R SP GF LVK ++KDC AF + G E S V G L Q G+ E+ FA S Q K G A + + + G G L+ P P LP++ AAA ALL+ A ADAK G RAW A ATLAWTL ++ A G S+ +G+ + + ++V CL A+ + + P+D SL V +L+AV +R S T +G + RA+ V +AA+PAVR EI + C L R + SPG L LSP+LEAVL+ PSS + DS+QS+L+D WN TFG L P AWK +F L R L+ + EV MPPG+T +
Sbjct: 3 VARVLDGEDSTRMVKVMALFAIAKNTMPPDRKPHHFDGGPGACSTSSRDDPISSAKTKLDADVVLVAPSVAQLAPAVARTMRMESTVARQQSAMAIHSLLGSVPGAMARCDPGRA-DRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVVEALRDGRLSQGMNRVLFYDASSQSQAA-TTAAAGGADPLPHASGSSSPAAA-SDKTNPRQ--ATPQRVKHAIRVWAVHLSLADPASLLRARDTAG-KKRLLDVGTGLFTWLCGKSADGRDDVKVQAVESWEMFAVSMMAQIGRDEAKKVAHMFLRALSRWVLKEK-GVVREVAMSSLMRVVASFPSISLKPLWTTTWKGDKKSK-GLGEVLRDVAGGSSGEIARHHSARVLAALLPCFC--LRPAEPHPLLRDAGLNLDEELPLLLSMLETLMEAFPSPIPEDAASAVDAAAPXXXPXSXSSRGAEEENCCADVRLEVLPTTGLIANAWCGLAFWAMEQAAAAGLDVEGTGKGKSGAADAGEFASDNQDGSGKGHGNTAAAASDCRKEGSGPSSSSAAPPQENEASETSQPLQVLLEWLLGVRARPSTGTSAKVTTVTEKAVPGGSTAEGRGKAAANSASSPTTDR-LARWKEALLAALIRGLSRRL---DVQDNEAEAGADDANAKLPGRAWLDAPVD-SSSVFDGRL------CAGDCPACAECLPAGGVIRQSISRKWLKSETPLWLVLLTGVLRGRCGLEYRCLDGGXXXXXXXXSRVVREACHKGNPRHE-SGSATDGTRGGGE---------SACQFSPVFL-------PQSFLAGALSLSPGGWPAQLLASLLTG-----ARSAKGRTQEEEDLALVVA--------GRVWRAEAARNLAEWNRCLPLSTDSYVGAAGAGFDGGVQGVTPGGDRYKGGPVAPHARTVGTSAAGVDVQKXXXXXXXXXXXXQPSKNLRTDTANTLRFSLHAACSLFSHPPEGNTRSQSKEPKGATGQACDLESRAAGSTGVQNEGAAIADHDGNL--------RGGASGGWSEGGKRS---VAVESFFGAEAARLWLGLFEAR-RNSPAQPKGFSKLVKALSKDCGNCAFVASWGPLGGGKGGAGEGGSSAVPPPGAWGLDFSQTQPPXXXXXXXXXPRTGQRESGDFASSM--QGDKTAGAAAMRYDKRSNTDHPEGKKQNGGGDALAPPXPFVALPVLAAAALALLTAAPAEADAKARG----RAWKAGSATLAWTLTAAAAAPGTTAWPPPASXXXXQWSSAAGLAAGEEGATVPAEVCQCLCAVHSCLKVAAXXXXXXXXXXXLNRSSSSGTAGFPLDGDSLAPVCRLLAVAVRTSYSTAXXXXXXXXXXDAGPESSSGSLVRASFSSSTASGTEVVVAADPAVRLEIRGLVACALSA----SRKVAASPGLLTALSPLLEAVLDVPSSSCDADSLQSSLLDVWNATFGKLNLKQPPAPAWKAAFSPALLRRLSDLSRRAEVEMPPGITLPVL 1451
BLAST of mRNA_H-elongata_contig12484.1868.1 vs. uniprot
Match: D8LJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ95_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.690e-50 Identity = 291/1029 (28.28%), Postives = 396/1029 (38.48%), Query Frame = 1
Query: 1318 LDALPTWSLIAQAWCGLILWAISEHRA-GPFFAGDG-----------------------CDNASNAGRNNSKD-QGQDGGATRKTSGGEIE----PLSMLLRWLLYDETIAGEET---VEAVVSKDPAAALNSGGLTSATVEYEVTSTSKRGLNDWKWTLLIALVHVLSS-LRAPKELREGLKTEPVEDCYVKTWMKLPVDVPMSFFQTRLKETSEGAESTNGACVECATARDV--QALVLKDLATSVPLWVALLVGVLEKPCH---------------------RHACD-GQPRRECTGCSRDHGRGAERPESGGFHPSAPCSCSVMFRGGRTSSSPESTLAQVLALSPPRSPARLLLTLARGMAPPLTERVEGDVDDETRARLVMSRSSFISTLGRTWCAEAARNLTEW---MPFCASS---SATDDSLHGEFGITL---------LQRHCRS---DAPGAAFVSVMNERRPDAELLESTADALRSVLKSAGRFLRSPLAEGLATLGKAMENT----CDRGRTCVDDCKIGRKDDHDRLLGAAPMLTE-RGSETQHWRDRWTPNHPPASMEEAFGCRAAKLWRDLFVARGRYSP----GFPSLVKKIAKDCAVLAFC--SGPDEPRQSVVNSSGTTELTQQYVQGKSEAWGFALSQSQQVPKKRGVNAPVLGEVESPS-------------------RCSS-------RASKGTGLLSRPPPMECLPIVLAAAQALLSVA-VNADAKDPGNMRTRAWGAALATLAWTLKSSNQAGGRSTE--------------------SGMESWAAAESATSDVLDCLRALRR---------ADASSG---KKTGQRELVVPVDEVSLVAVSQLVAVGLRFSCPTHGTTLYSGEGRDQ---------IHVKRAAV---CIAANPAVRHEILEVALCVLIGVRGLRRDLLTSPGTLGTLSPMLEAVLE-TPSSIETDSIQSALIDTWNHTFGNL----PGGRAWKKSFPENLHRLLARSAGLTEVRMPPGMTFEAI 3918
L+ LPT LIA AWCGL WA+ + A G G G N + A R+ K+ G + E PL +LL WLL T V V K + G A + T+ R L WK LL AL+ LS L E + + W+ PVD F AC EC A V Q++ K L + PLW+ LL GVL C R AC G PR E G + D RG GG + C S +F +S L L+LSP PA+LL +L G+ +G +E LV++ GR W AEAARNL EW +P S +A G G+TL + H R+ GA +R+P L +TA+ LR +L +A P + K E CD G V G +++ +G A RG +++ W + A++E FG A+LW LF AR R SP GF LVK +AKDC AF GP + WG SQ+Q P + P G+ E +CS+ + + G L+ PPP LP++ AAA ALL+ A ADAK G RAW A ATLAWTL ++ +G+ + + ++V CL A+R AD++ G + + P+D SL V +L+AV +R S T G + + + AV +AA+PAVR EI + C L R + SPG L LSP+LEAVL+ + SS + DS+QS+L+D WN TFG + P AWK +F +L R L+ + EV MP G+T +
Sbjct: 141 LEVLPTSGLIANAWCGLAFWAMEQAAAAGLDVQGTGKGXSGPXXXXXXXXXXXXXXXXXXXNTAAAARDCRKEGSGPSSSSAAPPKENEASEAGRPLQVLLEWLLGVRARPSTGTGAKVTTVTEKAVPGGSTAEGRGKAAANPASSPTTDR-LARWKVALLAALIRGLSRRLDVQNAETEAGADDADAKLPERAWLDAPVDSSSVF-------DGWSCAGDCPACAECLPAGGVIRQSISRKWLKSETPLWLVLLTGVLRGRCGLEYRCLDGSGGGGSGGESRVVREACHKGNPRHE-PGVATDGTRGG-----GG----SACQFSPVFLS-------QSFLGGALSLSPGGWPAQLLASLLTGV-----RSAKGRTQEEEDLALVVA--------GRVWRAEAARNLAEWNRCLPLSTDSYVGAAGAGFDGGAQGVTLGGDRYRGGPVAPHARTVGISVSGADVQQKQQQRQPSENLRTATANTLRFLLHAACSLFSRPPERNTRSQSKESEGAAGQACDPGNRTV--VSTGVQNEAREAVGVAEHDGNLRGEDSRGWSQGGKRS---AAVESVFGAETARLWLGLFEAR-RNSPAQPKGFSKLVKALAKDCGNCAFVVSGGP------LGGXXXXXXXXXXXXXXXXAVWGLDFSQTQP-PSQXXXXQPRTGQREPGDFASSTQGDKTAGAAATRYDKCSNTDHPEGKKQNGGGDTLAPPPPFVALPVLAAAALALLTAAPAEADAKAKG----RAWKAGSATLAWTLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGVAAGEEGATIPAEVCQCLGAVRSCLTVAVAAAADSAGGGPNRSSSSGTAGFPLDRDSLAPVCRLLAVAVRTSYATAGGAAAAADAGPEPSPGSLIQAAPSSSTAVGIEVVAADPAVRPEIRGLVACALSA----SRKVAASPGLLTALSPLLEAVLDVSSSSCDADSLQSSLLDVWNATFGKINLKQPPAPAWKAAFSPSLLRRLSDLSQRAEVEMPRGITLPVL 1110
BLAST of mRNA_H-elongata_contig12484.1868.1 vs. uniprot
Match: D8LJ94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ94_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.410e-43 Identity = 126/309 (40.78%), Postives = 173/309 (55.99%), Query Frame = 1
Query: 1 QAASLWSTVARILHDEAPRKLSKIMALLAVVNQTMGPSLMEPSAPLLTSAIAKSMRHESAQARKHAAAAAFRLLGDAPEAMRKSATLRSVATTEDEGDAWVPCLLRLCLDDCIGVRVEALRAAKRAVSC--IKRDGTIASWVLGRVKDSSLFQDMDRWRCHQASSTGVASEATARSAFLDVGQLT-ASQPSPTASKTKKTADREQAINAERVKHAMMAWAVHLSLADFDSLDKSRALPGNKKNAFHACTDKFLSASAKFNHNRSSVRVEAMEAWGMFASTCL-----RNAAKVAELAMRPMMRSVLKER 903
QA+SLW VAR+L E +++ K+MAL A+ TM P L+ PS L A+A++MR ES AR+ +A A LLG P AM + R+ E+E WV CLLRLC DD + VR +AL+AA+RAVS ++ + IA+WVL ++D L Q M R + ASS S+AT A + L A S TA+ +T R+ +RVKHA+ WAVHLSLAD L +++ G KK T F S K R V+V+A+E+W MFA + + A KVA + +R + R VLKE+
Sbjct: 97 QASSLWMAVARVLDGEDSKRMVKVMALFAIAKNTMAPDLVAPSVAQLAPAVAQTMRMESTVARQQSAMAIHSLLGSVPGAMARCDPGRA-DRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVLEALRDGRLSQGMSRVLFYDASSQ---SQATVPGAAGEADPLPHALGSSSTAAAPDRTNPRQ--ATPQRVKHAIRVWAVHLSLADPTRLLRAKDSAG-KKRLLDVGTGLFTWLSGKSADGRDDVKVQAVESWEMFAVSMMAQIGREEAKKVAHMFLRALSRWVLKEK 398 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12484.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12484.1868.1 >prot_H-elongata_contig12484.1868.1 ID=prot_H-elongata_contig12484.1868.1|Name=mRNA_H-elongata_contig12484.1868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=905bp MSTLQNLMQALSAPGPDIATSSIVATAFPPEAGAPATSLDALPTWSLIAQback to top mRNA from alignment at H-elongata_contig12484:506..8193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12484.1868.1 ID=mRNA_H-elongata_contig12484.1868.1|Name=mRNA_H-elongata_contig12484.1868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7688bp|location=Sequence derived from alignment at H-elongata_contig12484:506..8193+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12484:506..8193+ >mRNA_H-elongata_contig12484.1868.1 ID=mRNA_H-elongata_contig12484.1868.1|Name=mRNA_H-elongata_contig12484.1868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5430bp|location=Sequence derived from alignment at H-elongata_contig12484:506..8193+ (Himanthalia elongata Himel1 dioecious)back to top |