mRNA_H-elongata_contig1247.1865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1247.1865.1
Unique NamemRNA_H-elongata_contig1247.1865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1247.1865.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.080e-8
Identity = 60/160 (37.50%), Postives = 71/160 (44.38%), Query Frame = 1 
Query: 1000 ATAVTAAEGEESYD--DEWXXXXXXXFGGASTGAGIIKGYDLDSG---DTFAGALHEADGGGAGAAGGGEQAIASYLQWGAEGGVWYGDGNPGHGDMYGEGPDKDEQWGAQGWAGGGQQHHGAFGSPLRWSGGPEAASSFMRPVDALGPGLEEHIPFMVT 1464
            AT  T A G E+    D W         G+   AG I GYDL++G   +TF   +   DGG AG      +A  SY+QWGAEGGVW+GDG    G               QG  G                    A +  M P DALG GLEEH+PFMVT
Sbjct: 1962 ATGATIAGGFEAGTGADLWWDDEGWHGFGSGVSAGHISGYDLENGGDDNTFGWRVGGGDGGAAG------KAAQSYIQWGAEGGVWFGDG----GXXXXXXXXXXXXXXGQGQWGXXXXXXXXXXXXXXXXXXXXAGAGIMLPADALGTGLEEHLPFMVT 2111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1247.1865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE2.080e-837.50LysM domain-containing protein (Fragment) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1247contigH-elongata_contig1247:6089..8054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1465
Cds size1464
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.5381997-CDS-H-elongata_contig1247:6088..61501622929736.5381997-CDS-H-elongata_contig1247:6088..6150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 6089..6150 +
1691679138.16139-CDS-H-elongata_contig1247:6088..61501691679138.16139-CDS-H-elongata_contig1247:6088..6150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 6089..6150 +
1622929736.5501044-CDS-H-elongata_contig1247:6652..80541622929736.5501044-CDS-H-elongata_contig1247:6652..8054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 6653..8054 +
1691679138.174023-CDS-H-elongata_contig1247:6652..80541691679138.174023-CDS-H-elongata_contig1247:6652..8054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 6653..8054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1247.1865.1prot_H-elongata_contig1247.1865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1247 6089..8054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1247.1865.1

>prot_H-elongata_contig1247.1865.1 ID=prot_H-elongata_contig1247.1865.1|Name=mRNA_H-elongata_contig1247.1865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=488bp
GVGGVSGGIGGDGARSAGMYRNHAVLGVRLPSSEADPSAMLLSPTWPRGV
RSGFGTGASIGDGVREPLPEIPDHSPLQKQQQPQSSAQSSPASPSAPAPA
TAVVGGGVGAESSTTPPLPRIPRTVGDGDTGRGRGGSARVFLQRAEDSAA
VNREGVSGGGGGGDSGGDEGQREDGGASGRGGGEGAGDVDARGRAVSGEE
KCKGSDTNMDRGFRDTAEGGGSGGVSGGGTGGRSRSSTRSSSVSTSVGGE
RVNDPRCFEDRVEMRRRQISIDESFSSASSSQSSTGESSQVEVGVEASRH
DAPLQVWPLLPSEGRGASQPAPRTGEDEGSSPRATAVTAAEGEESYDDEW
HDDEWHDFGGASTGAGIIKGYDLDSGDTFAGALHEADGGGAGAAGGGEQA
IASYLQWGAEGGVWYGDGNPGHGDMYGEGPDKDEQWGAQGWAGGGQQHHG
AFGSPLRWSGGPEAASSFMRPVDALGPGLEEHIPFMVT
back to top

mRNA from alignment at H-elongata_contig1247:6089..8054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1247.1865.1 ID=mRNA_H-elongata_contig1247.1865.1|Name=mRNA_H-elongata_contig1247.1865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-elongata_contig1247:6089..8054+ (Himanthalia elongata Himel1 dioecious)
GGAGTTGGAGGAGTAAGCGGAGGAATAGGCGGAGATGGCGCTCGCAGCGC
TGGCATGTACAGGTTAGATATGGGGTGTGCGGAACAGGAGTGATTGGAAT
GTGGTTAGGGCCGCGACGGAGGGGAGGGGGTGATGAATTTGGAACTTCCC
ACCCACTTAGTTATACGATAGGCTGTAGTGATGTTATTTATTCCACCAGG
TAATTATTAAAGCGTGTTCCCGTGGGGGCTGTGTTGCTACCAACCCCTTC
TCCTCAAACTAGGAAGACGGATTCATCAATTTTGGGGGCGAGGACGTTGT
ATCGTGTGTGTAGGGCATACTGTGTGTACAGTAGCGTCTGGTTTAATTTT
GCTACCCTTAATGTTTCCGGTGTATAATAAAAAAGAGTAGGTGATACAAT
ATTGCGGTATCACGTGTTTTGTGTTGTCAGGTGGCATGTTTTGTTTGGAA
TATTTTTTTGTGTCCCCCGCGTCCCCCAAATCCCCCTCTAACGTGCCTGC
CCTTTTCACTGCTCCCATGCTAACTATGCGCGGGTTGACGCTCCCCCTCG
CTTGCCGTGGAAAGGAATCACGCCGTCCTTGGCGTTCGGCTCCCTTCGTC
GGAGGCTGATCCGTCAGCGATGCTGCTGTCGCCAACGTGGCCGAGAGGCG
TGCGGTCGGGCTTCGGGACGGGCGCTAGCATTGGTGACGGGGTAAGGGAA
CCGCTTCCCGAAATTCCAGATCATTCCCCTTTGCAGAAGCAGCAGCAGCC
ACAGTCGTCTGCACAGTCGTCGCCGGCGTCACCCTCGGCCCCAGCTCCGG
CGACAGCGGTGGTAGGAGGGGGGGTGGGAGCGGAATCGAGCACGACCCCT
CCTCTGCCGCGGATACCGCGTACGGTAGGAGACGGCGACACCGGGAGAGG
ACGGGGCGGCTCGGCGAGGGTCTTTCTCCAGAGGGCGGAGGACAGTGCTG
CTGTAAATAGGGAAGGAGTAAGCGGCGGAGGAGGTGGTGGTGATAGTGGT
GGTGACGAGGGGCAAAGAGAAGACGGCGGAGCGAGTGGCAGAGGCGGGGG
AGAAGGGGCTGGAGACGTCGATGCGCGTGGTCGCGCCGTCTCCGGCGAAG
AAAAATGTAAAGGCAGTGACACTAACATGGATAGAGGCTTTCGAGACACT
GCCGAGGGCGGGGGTAGCGGTGGTGTCAGCGGCGGCGGTACTGGAGGCCG
CAGCCGAAGCAGCACCCGAAGCAGCAGCGTGAGCACCAGCGTCGGTGGCG
AGCGGGTCAACGACCCCCGCTGCTTTGAAGACCGAGTGGAGATGAGACGG
CGACAGATCAGCATTGACGAGAGCTTCTCGTCCGCGAGCTCGTCTCAGTC
CAGCACCGGCGAGAGCTCGCAGGTGGAAGTGGGCGTTGAGGCGAGCCGCC
ACGATGCCCCCCTGCAGGTGTGGCCGCTCCTTCCCTCAGAAGGGAGAGGA
GCGTCCCAGCCAGCGCCGCGAACCGGTGAAGACGAGGGCAGCTCGCCGAG
GGCGACAGCGGTGACGGCAGCGGAAGGCGAGGAGTCGTACGATGACGAGT
GGCACGACGACGAGTGGCACGATTTTGGCGGCGCGAGCACCGGGGCCGGT
ATAATTAAGGGTTACGACCTGGACAGCGGTGACACCTTCGCGGGGGCGTT
ACACGAAGCCGACGGAGGCGGAGCTGGCGCCGCCGGCGGGGGGGAGCAGG
CGATCGCGAGCTACTTGCAGTGGGGTGCGGAGGGAGGTGTGTGGTATGGT
GATGGAAATCCCGGTCACGGTGACATGTACGGGGAGGGGCCGGATAAAGA
CGAGCAGTGGGGGGCGCAGGGATGGGCGGGCGGAGGACAGCAGCATCATG
GAGCCTTTGGTTCGCCGCTTAGGTGGTCTGGTGGTCCGGAGGCGGCCTCC
AGCTTTATGCGACCGGTGGATGCCCTGGGGCCAGGATTGGAGGAGCACAT
TCCGTTCATGGTGACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1247:6089..8054+

>mRNA_H-elongata_contig1247.1865.1 ID=mRNA_H-elongata_contig1247.1865.1|Name=mRNA_H-elongata_contig1247.1865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2928bp|location=Sequence derived from alignment at H-elongata_contig1247:6089..8054+ (Himanthalia elongata Himel1 dioecious)
GGAGTTGGAGGAGTAAGCGGAGGAATAGGCGGAGATGGCGCTCGCAGCGC
TGGCATGTACAGGGAGTTGGAGGAGTAAGCGGAGGAATAGGCGGAGATGG
CGCTCGCAGCGCTGGCATGTACAGGAATCACGCCGTCCTTGGCGTTCGGC
TCCCTTCGTCGGAGGCTGATCCGTCAGCGATGCTGCTGTCGCCAACGTGG
CCGAGAGGCGTGCGGTCGGGCTTCGGGACGGGCGCTAGCATTGGTGACGG
GGTAAGGGAACCGCTTCCCGAAATTCCAGATCATTCCCCTTTGCAGAAGC
AGCAGCAGCCACAGTCGTCTGCACAGTCGTCGCCGGCGTCACCCTCGGCC
CCAGCTCCGGCGACAGCGGTGGTAGGAGGGGGGGTGGGAGCGGAATCGAG
CACGACCCCTCCTCTGCCGCGGATACCGCGTACGGTAGGAGACGGCGACA
CCGGGAGAGGACGGGGCGGCTCGGCGAGGGTCTTTCTCCAGAGGGCGGAG
GACAGTGCTGCTGTAAATAGGGAAGGAGTAAGCGGCGGAGGAGGTGGTGG
TGATAGTGGTGGTGACGAGGGGCAAAGAGAAGACGGCGGAGCGAGTGGCA
GAGGCGGGGGAGAAGGGGCTGGAGACGTCGATGCGCGTGGTCGCGCCGTC
TCCGGCGAAGAAAAATGTAAAGGCAGTGACACTAACATGGATAGAGGCTT
TCGAGACACTGCCGAGGGCGGGGGTAGCGGTGGTGTCAGCGGCGGCGGTA
CTGGAGGCCGCAGCCGAAGCAGCACCCGAAGCAGCAGCGTGAGCACCAGC
GTCGGTGGCGAGCGGGTCAACGACCCCCGCTGCTTTGAAGACCGAGTGGA
GATGAGACGGCGACAGATCAGCATTGACGAGAGCTTCTCGTCCGCGAGCT
CGTCTCAGTCCAGCACCGGCGAGAGCTCGCAGGTGGAAGTGGGCGTTGAG
GCGAGCCGCCACGATGCCCCCCTGCAGGTGTGGCCGCTCCTTCCCTCAGA
AGGGAGAGGAGCGTCCCAGCCAGCGCCGCGAACCGGTGAAGACGAGGGCA
GCTCGCCGAGGGCGACAGCGGTGACGGCAGCGGAAGGCGAGGAGTCGTAC
GATGACGAGTGGCACGACGACGAGTGGCACGATTTTGGCGGCGCGAGCAC
CGGGGCCGGTATAATTAAGGGTTACGACCTGGACAGCGGTGACACCTTCG
CGGGGGCGTTACACGAAGCCGACGGAGGCGGAGCTGGCGCCGCCGGCGGG
GGGGAGCAGGCGATCGCGAGCTACTTGCAGTGGGGTGCGGAGGGAGGTGT
GTGGTATGGTGATGGAAATCCCGGTCACGGTGACATGTACGGGGAGGGGC
CGGATAAAGACGAGCAGTGGGGGGCGCAGGGATGGGCGGGCGGAGGACAG
CAGCATCATGGAGCCTTTGGTTCGCCGCTTAGGTGGTCTGGTGGTCCGGA
GGCGGCCTCCAGCTTTATGCGACCGGTGGATGCCCTGGGGCCAGGATTGG
AGGAGCACATTCCGTTCATGGTGACGGAATCACGCCGTCCTTGGCGTTCG
GCTCCCTTCGTCGGAGGCTGATCCGTCAGCGATGCTGCTGTCGCCAACGT
GGCCGAGAGGCGTGCGGTCGGGCTTCGGGACGGGCGCTAGCATTGGTGAC
GGGGTAAGGGAACCGCTTCCCGAAATTCCAGATCATTCCCCTTTGCAGAA
GCAGCAGCAGCCACAGTCGTCTGCACAGTCGTCGCCGGCGTCACCCTCGG
CCCCAGCTCCGGCGACAGCGGTGGTAGGAGGGGGGGTGGGAGCGGAATCG
AGCACGACCCCTCCTCTGCCGCGGATACCGCGTACGGTAGGAGACGGCGA
CACCGGGAGAGGACGGGGCGGCTCGGCGAGGGTCTTTCTCCAGAGGGCGG
AGGACAGTGCTGCTGTAAATAGGGAAGGAGTAAGCGGCGGAGGAGGTGGT
GGTGATAGTGGTGGTGACGAGGGGCAAAGAGAAGACGGCGGAGCGAGTGG
CAGAGGCGGGGGAGAAGGGGCTGGAGACGTCGATGCGCGTGGTCGCGCCG
TCTCCGGCGAAGAAAAATGTAAAGGCAGTGACACTAACATGGATAGAGGC
TTTCGAGACACTGCCGAGGGCGGGGGTAGCGGTGGTGTCAGCGGCGGCGG
TACTGGAGGCCGCAGCCGAAGCAGCACCCGAAGCAGCAGCGTGAGCACCA
GCGTCGGTGGCGAGCGGGTCAACGACCCCCGCTGCTTTGAAGACCGAGTG
GAGATGAGACGGCGACAGATCAGCATTGACGAGAGCTTCTCGTCCGCGAG
CTCGTCTCAGTCCAGCACCGGCGAGAGCTCGCAGGTGGAAGTGGGCGTTG
AGGCGAGCCGCCACGATGCCCCCCTGCAGGTGTGGCCGCTCCTTCCCTCA
GAAGGGAGAGGAGCGTCCCAGCCAGCGCCGCGAACCGGTGAAGACGAGGG
CAGCTCGCCGAGGGCGACAGCGGTGACGGCAGCGGAAGGCGAGGAGTCGT
ACGATGACGAGTGGCACGACGACGAGTGGCACGATTTTGGCGGCGCGAGC
ACCGGGGCCGGTATAATTAAGGGTTACGACCTGGACAGCGGTGACACCTT
CGCGGGGGCGTTACACGAAGCCGACGGAGGCGGAGCTGGCGCCGCCGGCG
GGGGGGAGCAGGCGATCGCGAGCTACTTGCAGTGGGGTGCGGAGGGAGGT
GTGTGGTATGGTGATGGAAATCCCGGTCACGGTGACATGTACGGGGAGGG
GCCGGATAAAGACGAGCAGTGGGGGGCGCAGGGATGGGCGGGCGGAGGAC
AGCAGCATCATGGAGCCTTTGGTTCGCCGCTTAGGTGGTCTGGTGGTCCG
GAGGCGGCCTCCAGCTTTATGCGACCGGTGGATGCCCTGGGGCCAGGATT
GGAGGAGCACATTCCGTTCATGGTGACG
back to top