mRNA_H-elongata_contig124692.1864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124692.1864.1
Unique NamemRNA_H-elongata_contig124692.1864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A6H5KNJ4_9PHAE (G-patch domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.080e-27
Identity = 54/65 (83.08%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:   16 METTGTSATKRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            M ++GTSA+KR +RFHGAFTGGFSAGF+NSVGSAEGWTPS+FSSSR+KRA P+EQRPEDFMDDED
Sbjct:    1 MSSSGTSASKRPDRFHGAFTGGFSAGFYNSVGSAEGWTPSAFSSSRDKRAAPKEQRPEDFMDDED 65
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: UPI00193E851F (G patch domain-containing protein 1 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E851F)

HSP 1 Score: 88.2 bits (217), Expect = 9.030e-19
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   49 RERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            R+RFHGAFTGGFSAGFFN+VGS EGWTPSSF SSR KRA  + Q+PEDFMDDED
Sbjct:   43 RQRFHGAFTGGFSAGFFNTVGSVEGWTPSSFKSSRAKRADNQGQKPEDFMDDED 96
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A6L5CYQ2_9INSE (G-patch domain-containing protein (Fragment) n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CYQ2_9INSE)

HSP 1 Score: 82.4 bits (202), Expect = 3.870e-18
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   49 RERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            ++RFHGAFTGGF+AG++N+VGS EGWTPS F SSR ++A  REQRP+DFMDDED
Sbjct:   41 KQRFHGAFTGGFAAGYWNTVGSEEGWTPSLFKSSRSEKAQKREQRPQDFMDDED 94
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A674ML30_TAKRU (DUF1604 domain-containing protein n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674ML30_TAKRU)

HSP 1 Score: 80.5 bits (197), Expect = 5.760e-18
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   19 ETTGTSATKRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDE 207
            E T      R +RFHGAFTGGFSAG+FN+VGS EGWTPS+F SSR+++A  R  RPEDFMD+E
Sbjct:   36 EQTVKDEKGRYQRFHGAFTGGFSAGYFNTVGSKEGWTPSTFVSSRQQKAEARPARPEDFMDEE 98
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A0G4EK29_VITBC (G-patch domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EK29_VITBC)

HSP 1 Score: 85.5 bits (210), Expect = 7.960e-18
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   43 KRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            K R RFHGAFTGGFSAG+FN+VG+AEGW PS F SSR+KRA  REQR EDFMD+ED
Sbjct:   63 KGRRRFHGAFTGGFSAGYFNTVGTAEGWAPSEFRSSRDKRADRREQRVEDFMDEED 118
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BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A3B4AM82_9GOBI (DUF1604 domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AM82_9GOBI)

HSP 1 Score: 80.5 bits (197), Expect = 8.240e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   19 ETTGTSATKRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDE 207
            E T      R +RFHGAFTGGFSAG+FN+VGS EGWTPS+F SSR+ +A  ++ RPEDFMD+E
Sbjct:   37 EQTVRDEKGRYQRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRQSKAEQQQARPEDFMDEE 99
[Close]
BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A077WYY2_9FUNG (G-patch domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WYY2_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 1.090e-17
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   43 KRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            K R RFHGAFTGGFSAG+FN+VGS EGWTPSSF SSR  R   RE RPEDFMD+ED
Sbjct:   57 KGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSSFVSSRSSRVEKREARPEDFMDEED 112
[Close]
BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: UPI001CF4186D (G patch domain-containing protein 1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4186D)

HSP 1 Score: 85.1 bits (209), Expect = 1.090e-17
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   49 RERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            R RFHGAFTGGFSAG+FNSVG+ EGW PS+F SSR K+  PR QRPEDFMDDED
Sbjct:   43 RRRFHGAFTGGFSAGYFNSVGTKEGWQPSTFVSSRSKKFEPRAQRPEDFMDDED 96
[Close]
BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A3B3UNI6_9TELE (DUF1604 domain-containing protein n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A3B3UNI6_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 1.310e-17
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   19 ETTGTSATKRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDE 207
            E T      R +RFHGAFTGGFSAG+FN+VGS EGWTPS+F SSR+++A     RPEDFMD+E
Sbjct:   35 EQTVKDERGRYQRFHGAFTGGFSAGYFNTVGSKEGWTPSTFVSSRQQKAEKHHARPEDFMDEE 97
[Close]
BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Match: A0A1X2H3W2_SYNRA (G-patch domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H3W2_SYNRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-17
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   43 KRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRAIPREQRPEDFMDDED 210
            K R RFHGAFTGGFSAG+FN+VGS EGW PS+F SSRE R+  RE RPEDFMD+ED
Sbjct:   57 KGRRRFHGAFTGGFSAGYFNTVGSKEGWAPSTFMSSREARSSQREARPEDFMDEED 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124692.1864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNJ4_9PHAE5.080e-2783.08G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
UPI00193E851F9.030e-1981.48G patch domain-containing protein 1 n=1 Tax=Nilapa... [more]
A0A6L5CYQ2_9INSE3.870e-1872.22G-patch domain-containing protein (Fragment) n=1 T... [more]
A0A674ML30_TAKRU5.760e-1865.08DUF1604 domain-containing protein n=1 Tax=Takifugu... [more]
A0A0G4EK29_VITBC7.960e-1876.79G-patch domain-containing protein n=1 Tax=Vitrella... [more]
A0A3B4AM82_9GOBI8.240e-1863.49DUF1604 domain-containing protein n=1 Tax=Periopht... [more]
A0A077WYY2_9FUNG1.090e-1776.79G-patch domain-containing protein n=1 Tax=Lichthei... [more]
UPI001CF4186D1.090e-1777.78G patch domain-containing protein 1-like n=1 Tax=A... [more]
A0A3B3UNI6_9TELE1.310e-1763.49DUF1604 domain-containing protein n=3 Tax=Ovalenta... [more]
A0A1X2H3W2_SYNRA1.490e-1775.00G-patch domain-containing protein n=1 Tax=Syncepha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124692contigH-elongata_contig124692:349..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score87.0
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog13249.RPRC005181-PA
KEGG koko:K13123
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.Protein of unknown function (DUF1604)
EggNOG OGs38DVS@33154,3BG41@33208,3D0CG@33213,3EA3K@33342,3SIRU@50557,41YGK@6656,KOG2138@1,KOG2138@2759
COG Functional cat.A
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124692.1864.1prot_H-elongata_contig124692.1864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124692 349..643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.4679177-CDS-H-elongata_contig124692:348..4531622929736.4679177-CDS-H-elongata_contig124692:348..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124692 349..453 -
1691679138.1093676-CDS-H-elongata_contig124692:348..4531691679138.1093676-CDS-H-elongata_contig124692:348..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124692 349..453 -
1622929736.4812498-CDS-H-elongata_contig124692:553..6431622929736.4812498-CDS-H-elongata_contig124692:553..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124692 554..643 -
1691679138.1309953-CDS-H-elongata_contig124692:553..6431691679138.1309953-CDS-H-elongata_contig124692:553..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124692 554..643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.498418-UTR-H-elongata_contig124692:643..6581622929736.498418-UTR-H-elongata_contig124692:643..658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124692 644..658 -
1691679138.1500711-UTR-H-elongata_contig124692:643..6581691679138.1500711-UTR-H-elongata_contig124692:643..658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124692 644..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124692.1864.1

>prot_H-elongata_contig124692.1864.1 ID=prot_H-elongata_contig124692.1864.1|Name=mRNA_H-elongata_contig124692.1864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
METTGTSATKRRERFHGAFTGGFSAGFFNSVGSAEGWTPSSFSSSREKRA
IPREQRPEDFMDDED
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mRNA from alignment at H-elongata_contig124692:349..658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124692.1864.1 ID=mRNA_H-elongata_contig124692.1864.1|Name=mRNA_H-elongata_contig124692.1864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=310bp|location=Sequence derived from alignment at H-elongata_contig124692:349..658- (Himanthalia elongata Himel1 dioecious)
TACTTTACATTCAAAATGGAAACGACTGGGACGTCAGCAACGAAGCGCCG
TGAGAGATTCCATGGAGCATTCACGGGTGGATTTTCTGCTGGTTTCTTCA
ACAGCGTAAGTGTCTGGCGATAGTCAAGGTTTCTATTCTACATGAGATTT
TCTCCTCAGTGGGATCATTCGTTGATCAGCGAAGCTGTTCTTTTGCTCCT
GACAGGTTGGGAGTGCTGAGGGATGGACCCCATCCTCCTTCTCATCATCT
AGAGAAAAACGTGCTATACCACGAGAGCAGAGGCCAGAGGATTTTATGGA
TGATGAGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig124692:349..658-

>mRNA_H-elongata_contig124692.1864.1 ID=mRNA_H-elongata_contig124692.1864.1|Name=mRNA_H-elongata_contig124692.1864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig124692:349..658- (Himanthalia elongata Himel1 dioecious)
ATGGAAACGACTGGGACGTCAGCAACGAAGCGCCGTGAGAGATTCCATGG
AGCATTCACGGGTGGATTTTCTGCTGGTTTCTTCAACAGCATGGAAACGA
CTGGGACGTCAGCAACGAAGCGCCGTGAGAGATTCCATGGAGCATTCACG
GGTGGATTTTCTGCTGGTTTCTTCAACAGCGTTGGGAGTGCTGAGGGATG
GACCCCATCCTCCTTCTCATCATCTAGAGAAAAACGTGCTATACCACGAG
AGCAGAGGCCAGAGGATTTTATGGATGATGAGGACGTTGGGAGTGCTGAG
GGATGGACCCCATCCTCCTTCTCATCATCTAGAGAAAAACGTGCTATACC
ACGAGAGCAGAGGCCAGAGGATTTTATGGATGATGAGGAC
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