mRNA_H-elongata_contig12469.1863.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12469.1863.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 492 bits (1267), Expect = 4.610e-151 Identity = 427/1088 (39.25%), Postives = 526/1088 (48.35%), Query Frame = 1
Query: 1 YRPVREALLSMVAQPGFTKKRGGCRQHLVQTLVEAAPGPVPPSALSPMLRARETGPSVGDLALEILERVA----DGNGRSSLDGESMGAPKKAILELFHVLVEEVVASGTGKRGKSAATRGGPPGHLLSFLVRARTVLPAHVLVFSKELLALADSRWSAARKLSIAVLGLIL----ELGGACSETI-DQALASVLQFARTDSDATVRAAAFDCVVDFLDGSYERVLSRAVRDPDQSLRWWVRYFNALRQVLL---PTSLHYILCQADE-GEGRASGRGIV--------------------ASDVNSSDDIP-------------------------------NDGPPDDGSRAHGRGHSSGAHIHTMQTNMGPDEKDDGERPGKRRDIVE--PWAVGGVLLTCLSVSAEAPLVDGSKVVRAKAIACSLRILDAYGGGIGREG-HCHKTVGEVGEKFHNSNRTTARVLSIVRSGVVRGACVALEAVASESCVGATTQSASSPGLAGSGKTRRVVDAARDLLSLTCVTPTPIDLLVCYTRC--------GNASGATTAPAAEAKRAIRDVVVKRFCSDIGSLLKMISTVMKAKYREGTEADPEESFDSTGRGNDRHLEGCSSDSPSEVLCELLAGVDTEALTRLLGAALEAYSGVGNGVNSDHSGEPSNFSAGTDVPVLLRTLVLLGEAKGLT----------------------TGATTGPGRTESLDQDHLLASRIGHFWRRLEQRMWDIERYEAGPTCSGRS--------NNRGVEVDDDD-----------EMAASNAVPECAELLRLFRLLATRSLLSQEDRVALEDLVFPSALSRRRLILPAVSLALALDEPHRLLLSSLAVLQDAAFYRTSTDVGRACNYVRLIGVMARENASFITAHVRKQYGRLADRRIGQGDLQEEATQRDLEDGED-YMAEVSNREAMEREIRDLREASVTSDGMLSCYTPFLLAIVKRRASEDPDSGDTPDVSPGSR-EAQDG--------HGGVYP----RSEEGSVGGAVGHA-------RCPPSLCAEALWALSEYAVLSPGLAAAEVLPVAEALARNTVEHPQV 2853
+R VR LL +VAQPGF KKR G RQHLV L EAA GPVPPSAL P+LRA+ETGP+ DL LEIL+R+ +G G S+ S K A+++L H +V EVV SG K G+ A GPP HL+SFLV A + LP + LVF+K+LL L +S S ARK+S+A+L IL ELG C TI D ALA+VL+ +R+D DATVR++AFD V F+ G E L R D D + VL P + L D G G GRG+ A+ +D P +G SR H GH AH T + + G R +R+ V PWAVGG L + LS +AEA L DGSK VRAKA+AC LRIL+ +GG I G C T G+ ++RV +I+ S V +GA ALE +A ++ G T Q AS G G+ R+ D AR LL L C+ +P+DL++CY RC G A GAT EAKRA+R++ FC+DI L K +S +M A R D + D EG S SEVLCE+LAGVD+ A+ LL ALEAY+ D G A PVLLRTL LL EA G G + G + +Q LA G FWRRLEQRM DIER + G GR RGV V + AAS+ + E +ELLR+F+LLATRSLLS E+ ALE LVFP+ALSRRR AC+YVRLIGV+ARENASFI AH+R+QY R G+ + E+GED YMA VSNREAM A+ +G D GD GSR +AQD GG R + G GA A CP +LC EALWALSEYAVLS GLAAAEVLP+AE LA +T+EHPQV
Sbjct: 70 HRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGGGSI--RSNDTSKNAVIDLLHHVVAEVVTSGVTKGGRRGAK--GPPAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGHGRELGAQCGGTILDPALAAVLRLSRSDGDATVRSSAFDSVAKFI-GEVESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGH---AHRETREAGAASE----GNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPG-VSSRVETIL-SAVAKGALAALEPLAGDNTGGPTIQ-ASLNSTGGGGRHRKAADTARALLVLPCIESSPVDLVMCYARCRVAPGVGEGEAVGAT-----EAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANIDFADT-----TEGASFPL-SEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDG------AAASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSARCLSRPGE--------EESAENGEDDYMAGVSNREAM-------GAATTAEEGEXXXXXXXXXXXXXXXXXXXXD-GDCGGARVGSRGDAQDEMQYRMAQQDGGKVEATVFREDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQV 1069
BLAST of mRNA_H-elongata_contig12469.1863.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 234 bits (598), Expect = 1.290e-61 Identity = 262/841 (31.15%), Postives = 350/841 (41.62%), Query Frame = 1
Query: 424 SKELLALADSRWSAARKLSIAVLGLILE----LGGACSETI-DQALASVLQFARTDSDATVRAAAFDCVVDFL-----------------------DGS---------YERVLSRAVRDPDQSLRWWVRYFNALRQVLLPTSLHYILCQADEGEGRASG----------------------------RGIVASDVNSSDDIPNDGPPDDGSRAHGRGHSSGAHIHTMQTNMGPDEKDDGERPGKRRDIVEPWAVGGVLLTCLSVSAEAPLVDGSKVVRAKAIACSLRILDAYGGGIGREGHC-HKTVG-EVGEK----------------------------FHNSNRTTAR-------------------------------------------------------VLSIVRSGVVRGACVALEAVASESCVGATTQSASSPGLAGSGKTRRVVDAARDLLSLTCVTPTPIDLLVCYTRCGNASGA---TTAPAAEAKRAIRDVVVKRFCSDIGSLLKMISTVMKA-KYREGTEADPEESFDSTGRGNDRHLEGCSSDSPSEVLCELLAGVDTEALTRLLGAALEAYSGVGNGVNSDHSGEPSNFSA-GTDVPVLLRTLVLLGEAKGLTTGATTGPGRTESLDQDHLLASRIGHFWRRLEQRMWDIER--------YEAGPTCSGRSNNRGVEVDDDD------------------EMAASNAVPECAELLRLFRLLATRSLLSQEDRVALEDLVFPSALSRRRLILPAVSLALALDEPHRLLLSSLAVLQDAAFYRTSTDVGRACNYVRLIGVMARENASFITAHVRKQYGRLADRRIG 2403
+++LLAL +S S ARK+S+AVL ILE LG C TI D ALA++L+ AR+D DATVR++AFD + F+ DG+ R + A+ D ++ + ++ G +G G + + P P RAH +GA P E + G+R + + PW +GG L + LS +AEA L DGSK VRAKA+ACSL IL+ +G I G C T G E G F S R R + ++ R V +GA +ALEA+A ++ G+TTQ AS G G+ R+ D AR LL L CV P+P++L++CY RC ASG A EAKRA+R++ F +DI LLK +S +M A + R+G E D + N +S S SEVL E+LAGVD+ A+ LL ALEAY+ D GE +S +D LRTL A G FWRRLEQRM DIER ++ G+ RG+ + + AA +AV E +ELLR+F+LLAT SLLS ++ ALE LVFP+ALSRRRLI+ S+ + AF RAC+YVRLIGV+ARENASFI AHVR+QY +RR G
Sbjct: 11 TQDLLALTESSSSPARKMSLAVLAAILEHGRELGAQCGGTILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXXRGVTHGARATETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGA----------PSEGNRGQRR-EAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQ-ASLNSTGGGGRHRKAADTARALLILPCVEPSPVELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLE-------DGSANINFADTTEGASFSLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGETRKYSNYNSDEEEQLRTL-----------------------------AGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLIVSR----------------SIDIHNSFAFLVLVWG-SRACDYVRLIGVLARENASFIAAHVREQYRCEKERREG 786
BLAST of mRNA_H-elongata_contig12469.1863.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.700e-8 Identity = 63/165 (38.18%), Postives = 73/165 (44.24%), Query Frame = 1
Query: 2539 MLSCYTPFLLAIVKRRASEDPDS--------------------------------------GDTPDVSPGSREAQDGH-----------GGVYP----RSEEGSVGGAVGHAR-------CPPSLCAEALWALSEYAVLSPGLAAAEVLPVAEALARNTVEHPQV 2853
MLSCYTPFLLAIV+RR ++ + GD + GS D H GG R + G GA A CP +LC EAL ALSEYAVLS GLAAAEVLP+AE LA +T+EHPQV
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGS--GGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQV 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12469.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12469.1863.1 >prot_H-elongata_contig12469.1863.1 ID=prot_H-elongata_contig12469.1863.1|Name=mRNA_H-elongata_contig12469.1863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=948bp MVAQPGFTKKRGGCRQHLVQTLVEAAPGPVPPSALSPMLRARETGPSVGDback to top mRNA from alignment at H-elongata_contig12469:920..7480+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12469.1863.1 ID=mRNA_H-elongata_contig12469.1863.1|Name=mRNA_H-elongata_contig12469.1863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6561bp|location=Sequence derived from alignment at H-elongata_contig12469:920..7480+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12469:920..7480+ >mRNA_H-elongata_contig12469.1863.1 ID=mRNA_H-elongata_contig12469.1863.1|Name=mRNA_H-elongata_contig12469.1863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5688bp|location=Sequence derived from alignment at H-elongata_contig12469:920..7480+ (Himanthalia elongata Himel1 dioecious)back to top |