mRNA_H-elongata_contig124661.1859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124661.1859.1
Unique NamemRNA_H-elongata_contig124661.1859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124661.1859.1 vs. uniprot
Match: D7FYX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.030e-30
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 QIFGGPGAGTGRKWGNSPATFPSFRSLMTTTSEITGTAGAETTLRVTKTQVRESALGRLLKPLFNLDDVEFQTDRLLSPIRGGSTEV 261
            +IF G  AG+ ++    P TFPSFRS+MTTTSEIT  AG ET LRV KTQVR+SALGRLLKPLFNLD++EFQTD LL+P++ GSTEV
Sbjct:  239 EIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKPLFNLDNIEFQTDNLLTPLKEGSTEV 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124661.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX5_ECTSI6.030e-3068.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124661contigH-elongata_contig124661:257..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124661.1859.1prot_H-elongata_contig124661.1859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124661 297..813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.8388147-UTR-H-elongata_contig124661:256..2961622929735.8388147-UTR-H-elongata_contig124661:256..296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124661 257..296 -
1691679137.8854177-UTR-H-elongata_contig124661:256..2961691679137.8854177-UTR-H-elongata_contig124661:256..296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124661 257..296 -
1622929735.9153686-UTR-H-elongata_contig124661:813..8511622929735.9153686-UTR-H-elongata_contig124661:813..851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124661 814..851 -
1691679137.9146872-UTR-H-elongata_contig124661:813..8511691679137.9146872-UTR-H-elongata_contig124661:813..851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124661 814..851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.8869505-CDS-H-elongata_contig124661:296..3671622929735.8869505-CDS-H-elongata_contig124661:296..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124661 297..367 -
1691679137.894406-CDS-H-elongata_contig124661:296..3671691679137.894406-CDS-H-elongata_contig124661:296..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124661 297..367 -
1622929735.9015324-CDS-H-elongata_contig124661:701..8131622929735.9015324-CDS-H-elongata_contig124661:701..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124661 702..813 -
1691679137.9038246-CDS-H-elongata_contig124661:701..8131691679137.9038246-CDS-H-elongata_contig124661:701..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124661 702..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124661.1859.1

>prot_H-elongata_contig124661.1859.1 ID=prot_H-elongata_contig124661.1859.1|Name=mRNA_H-elongata_contig124661.1859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MGQQPSDVSVVSQPHDHHFGDHRHGRRRDDSSSDKDSGARKRARTIAEAS
LQPRRRGVPD*
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mRNA from alignment at H-elongata_contig124661:257..851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124661.1859.1 ID=mRNA_H-elongata_contig124661.1859.1|Name=mRNA_H-elongata_contig124661.1859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at H-elongata_contig124661:257..851- (Himanthalia elongata Himel1 dioecious)
CAGATATTCGGCGGGCCAGGCGCGGGTACGGGCAGAAAATGGGGCAACAG
CCCAGCGACGTTTCCGTCGTTTCGCAGCCTCATGACCACCACTTCGGAGA
TCACCGGCACGGCAGGCGCCGAGACGACTCTTCGAGTGACAAAGACTCAG
GTGCTGCTCCGCATCTTTCCACGAACGAAATCTCGTCCCGCGCCTTCCTG
AAATCGCAAGTATTCCGCAGCCTATCGTCCGCGTGTATGGTTCAGTTCGC
GTGCTCGAAAGCGCCCGGTCCTCTCCTTTCCGGAACCATCTTTGTCGCGC
AACCAGCGAGCTTCAATCCGCTGCATCCGAGCTGCGGGTGAGACCCCTCC
TCGCCTACCTCTGCTGTGCATCCTCTTCGTGCGGTGTTGTGTCTTTGCAC
GTACGTGTCTTTTTAATAGTTTTTGGGGTGGGAAAAAATGCACGAAAAAC
GCAAAAATGCCAACATGTGTTTCGCGTGATCCAGGTGCGAGAAAGCGCGC
TCGGACGATTGCTGAAGCCTCTCTTCAACCTCGACGACGTGGAGTTCCAG
ACTGACCGTCTCCTTTCGCCTATCCGAGGAGGGTCCACAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig124661:257..851-

>mRNA_H-elongata_contig124661.1859.1 ID=mRNA_H-elongata_contig124661.1859.1|Name=mRNA_H-elongata_contig124661.1859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig124661:257..851- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAACAGCCCAGCGACGTTTCCGTCGTTTCGCAGCCTCATGACCA
CCACTTCGGAGATCACCGGCACGGCAGGCGCCGAGACGACTCTTCGAGTG
ACAAAGACTCAGATGGGGCAACAGCCCAGCGACGTTTCCGTCGTTTCGCA
GCCTCATGACCACCACTTCGGAGATCACCGGCACGGCAGGCGCCGAGACG
ACTCTTCGAGTGACAAAGACTCAGGTGCGAGAAAGCGCGCTCGGACGATT
GCTGAAGCCTCTCTTCAACCTCGACGACGTGGAGTTCCAGACTGAGTGCG
AGAAAGCGCGCTCGGACGATTGCTGAAGCCTCTCTTCAACCTCGACGACG
TGGAGTTCCAGACTGA
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