mRNA_H-elongata_contig12466.1858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12466.1858.1
Unique NamemRNA_H-elongata_contig12466.1858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12466.1858.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.340e-22
Identity = 61/136 (44.85%), Postives = 70/136 (51.47%), Query Frame = 2 
Query:    2 ALSVFREMQADGVAADRNSYFFAVSACSRRGVTRTALELVAEMKAA------------------------QTKGGPAPDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVRPNVIVVNTVLSACAKCGQIERAKE 337
            ALSVFREMQ+DGV  DR+SYFF +SACS+RG  +TAL L+AEMKA                            G PAPDLL                           AGV PNV+VVNT LSACAKCGQ+ RA +
Sbjct:  185 ALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQ 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12466.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI4.340e-2244.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12466contigH-elongata_contig12466:4372..5101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog2880.D7FNK0
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12466.1858.1prot_H-elongata_contig12466.1858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12466 4372..5079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.645277-CDS-H-elongata_contig12466:4371..44481622929735.645277-CDS-H-elongata_contig12466:4371..4448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12466 4372..4448 -
1691679137.8565068-CDS-H-elongata_contig12466:4371..44481691679137.8565068-CDS-H-elongata_contig12466:4371..4448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12466 4372..4448 -
1622929735.6612015-CDS-H-elongata_contig12466:4841..50791622929735.6612015-CDS-H-elongata_contig12466:4841..5079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12466 4842..5079 -
1691679137.8672516-CDS-H-elongata_contig12466:4841..50791691679137.8672516-CDS-H-elongata_contig12466:4841..5079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12466 4842..5079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.6800802-UTR-H-elongata_contig12466:5079..51011622929735.6800802-UTR-H-elongata_contig12466:5079..5101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12466 5080..5101 -
1691679137.875641-UTR-H-elongata_contig12466:5079..51011691679137.875641-UTR-H-elongata_contig12466:5079..5101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12466 5080..5101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12466.1858.1

>prot_H-elongata_contig12466.1858.1 ID=prot_H-elongata_contig12466.1858.1|Name=mRNA_H-elongata_contig12466.1858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MQADGVAADRNSYFFAVSACSRRGVTRTALELVAEMKAAQTKGGPAPDLL
LYAVAVKACAGGKSWREALDLLDEMSAAGVRPNVIVVNTVLSACAKCGQI
ERAKE
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mRNA from alignment at H-elongata_contig12466:4372..5101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12466.1858.1 ID=mRNA_H-elongata_contig12466.1858.1|Name=mRNA_H-elongata_contig12466.1858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig12466:4372..5101- (Himanthalia elongata Himel1 dioecious)
TGCGTTGAGTGTCTTCCGAGAGATGCAGGCGGATGGAGTGGCCGCCGACC
GCAACTCGTACTTCTTCGCGGTTAGCGCGTGCTCGCGGCGGGGAGTGACG
AGGACGGCGCTCGAGCTCGTCGCTGAGATGAAGGCCGCGCAGACCAAGGG
CGGCCCGGCGCCGGACCTGCTGCTCTACGCCGTCGCCGTCAAGGCGTGCG
CGGGGGGGAAGTCGTGGCGAGAAGCGCTCGATCTGCTCGACGAGATGTCT
GCTGCCGGGGGTGAGAATCTTACTGCCGGCACGTCGGACTTGATTTCGTC
CTAGGCGAAGATACACATATCAATTTTATTTTTTTGCTCAAGCGCCTGAG
AGCGTTACTTGGGATTGTCTCGCGTACGGGGTAGTACTTGCCTTACCCGG
CGAAACCGAGAATCGTTTAGGTCAATCGATGGCAAGCACTTGGGTCGATC
GGTGGTAGCACGCAATCGACAAAGAAAAAAGAAGAAGCGATATATACATA
TATACACTATATATCTATATATATCTATGCGTATGAATCTCATAAGCGGG
TATCATCTGATTGACGTGCGCCGAGCCTTTTTCTCTCGCCGCATATATAA
TCTTTGTCCTTATTCTTGACTCCCTCGTTCTTCCGGGTGTGTCCGTTTTC
CAGTGCGACCAAACGTAATTGTAGTGAATACAGTCCTATCGGCGTGTGCA
AAGTGCGGCCAGATTGAACGCGCGAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig12466:4372..5101-

>mRNA_H-elongata_contig12466.1858.1 ID=mRNA_H-elongata_contig12466.1858.1|Name=mRNA_H-elongata_contig12466.1858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig12466:4372..5101- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCGGATGGAGTGGCCGCCGACCGCAACTCGTACTTCTTCGCGGT
TAGCGCGTGCTCGCGGCGGGGAGTGACGAGGACGGCGCTCGAGCTCGTCG
CTGAGATGAAGGCCGCGCAGACCAAGGGCGGCCCGGCGCCGGACCTGCTG
CTCTACGCCGTCGCCGTCAAGGCGTGCGCGGGGGGGAAGTCGTGGCGAGA
AGCGCTCGATCTGCTCGACGAGATGTCTGCTGCCGGGGATGCAGGCGGAT
GGAGTGGCCGCCGACCGCAACTCGTACTTCTTCGCGGTTAGCGCGTGCTC
GCGGCGGGGAGTGACGAGGACGGCGCTCGAGCTCGTCGCTGAGATGAAGG
CCGCGCAGACCAAGGGCGGCCCGGCGCCGGACCTGCTGCTCTACGCCGTC
GCCGTCAAGGCGTGCGCGGGGGGGAAGTCGTGGCGAGAAGCGCTCGATCT
GCTCGACGAGATGTCTGCTGCCGGGGTGCGACCAAACGTAATTGTAGTGA
ATACAGTCCTATCGGCGTGTGCAAAGTGCGGCCAGATTGAACGCGCGAAG
GAGTGCGACCAAACGTAATTGTAGTGAATACAGTCCTATCGGCGTGTGCA
AAGTGCGGCCAGATTGAACGCGCGAAGGAG
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