mRNA_H-elongata_contig124641.1856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig124641.1856.1
Unique Name	mRNA_H-elongata_contig124641.1856.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.620e-23
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIV-VIRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FLKHKSDA  A R  +          +V ++R+D+GGE  G +F S   +L IK++ TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  727 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 875

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.630e-23
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIV-VIRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FLKHKSDA  A R  +          +V ++R+D+GGE  G +F S   +L IK++ TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 582

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.010e-22
Identity = 62/150 (41.33%), Postives = 87/150 (58.00%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLK--IVVIRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FLK KSDA +A R  +      +G+   + ++R+D+GGE  G +F S   +L IK++ TP Y+PQYNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N
Sbjct:  633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASV-RADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAIN 781

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.880e-22
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLK--IVVIRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FL++KSDA +A R  +       G+   + ++R+D+GGE  G +F S   +L IK++ TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 341

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.590e-22
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLK--IVVIRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FL++KSDA +A R  +       G+   + ++R+D+GGE  G +F S   +L IK++ TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMN 396

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.950e-22
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL-RDIINDYFTPEGLKIVVIRTDSGGE*-HGQFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DLSG     SL G  + ++  DD+TR+  V FLKHKSDA  A  R +  +        ++V+R+D+GGE   G+F    RK  IK++ TP ++P+YNGV ER LGL++D  +A       L  G     S  LWAEA+A++C+  N
Sbjct:  736 VFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 882

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.960e-22
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIVV--IRTDSGGE*HG-QFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DL G     S+ G  + M+  DDFTR   + FL++KSDA +A R  +      +G+  +V  +R+D+GGE  G +F S   +L IK++ TP ++PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N
Sbjct:  331 VFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASV-RADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALN 479

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.960e-22
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL-RDIINDYFTPEGLKIVVIRTDSGGE*-HGQFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DLSG     SL G  + ++  DD+TR+  V FLKHKSDA  A  R +  +        ++V+R+D+GGE   G+F    RK  IK++ TP ++P+YNGV ER LGL++D  +A       L  G     S  LWAEA+A++C+  N
Sbjct:  571 VFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 717

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.980e-22
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL-RDIINDYFTPEGLKIVVIRTDSGGE*-HGQFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DLSG     SL G  + ++  DD+TR+  V FLKHKSDA  A  R +  +        ++V+R+D+GGE   G+F    RK  IK++ TP ++P+YNGV ER LGL++D  +A       L  G     S  LWAEA+A++C+  N
Sbjct:  584 VFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 730

[Close]

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.990e-22
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1

Query:    1 LFIDLSGPFHETSLRGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL-RDIINDYFTPEGLKIVVIRTDSGGE*-HGQFLSFLRKLGIKRKSTPPYTPQYNGVVERVLGLLRDKTVA-------LLHGVMGGKSDRLWAEAMAYACDMRN 420
            +F+DLSG     SL G  + ++  DD+TR+  V FLKHKSDA  A  R +  +        ++V+R+D+GGE   G+F    RK  IK++ TP ++P+YNGV ER LGL++D  +A       L  G     S  LWAEA+A++C+  N
Sbjct:  727 VFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 873

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot

BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JBA7_9PHAE	1.620e-23	41.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	1.630e-23	41.61	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2M6_9PHAE	1.010e-22	41.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3Y0_9PHAE	1.880e-22	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRL9_9PHAE	3.590e-22	40.00	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JTI6_9PHAE	4.950e-22	40.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JB16_9PHAE	4.960e-22	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	4.960e-22	40.27	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	4.980e-22	40.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	4.990e-22	40.27	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig124641	contig	H-elongata_contig124641:240..659 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	420
Cds size	156
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig124641.1856.1	prot_H-elongata_contig124641.1856.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig124641 300..455 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929735.3616207-UTR-H-elongata_contig124641:239..299	1622929735.3616207-UTR-H-elongata_contig124641:239..299	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124641 240..299 +
1691679137.6883159-UTR-H-elongata_contig124641:239..299	1691679137.6883159-UTR-H-elongata_contig124641:239..299	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124641 240..299 +
1622929735.3942156-UTR-H-elongata_contig124641:455..659	1622929735.3942156-UTR-H-elongata_contig124641:455..659	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124641 456..659 +
1691679137.7126892-UTR-H-elongata_contig124641:455..659	1691679137.7126892-UTR-H-elongata_contig124641:455..659	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124641 456..659 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929735.376728-CDS-H-elongata_contig124641:299..455	1622929735.376728-CDS-H-elongata_contig124641:299..455	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig124641 300..455 +
1691679137.6998954-CDS-H-elongata_contig124641:299..455	1691679137.6998954-CDS-H-elongata_contig124641:299..455	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig124641 300..455 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig124641:240..659+
coding sequence from alignment at H-elongata_contig124641:240..659+

protein sequence of mRNA_H-elongata_contig124641.1856.1

>prot_H-elongata_contig124641.1856.1 ID=prot_H-elongata_contig124641.1856.1|Name=mRNA_H-elongata_contig124641.1856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIVVIRTDSGG
E*

mRNA from alignment at H-elongata_contig124641:240..659+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig124641.1856.1 ID=mRNA_H-elongata_contig124641.1856.1|Name=mRNA_H-elongata_contig124641.1856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig124641:240..659+ (Himanthalia elongata Himel1 dioecious)
CTGTTCATTGATCTTTCAGGCCCCTTTCACGAGACGTCTCTCCGAGGAAA
CAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTCC
GTTTCCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGAGACATAATC
AACGACTACTTCACGCCCGAGGGCCTCAAGATTGTCGTCATCCGCACGGA
CAGTGGGGGAGAATAACACGGCCAGTTCCTGTCTTTCCTGCGTAAGCTCG
GAATCAAGCGCAAGTCCACACCCCCATATACCCCCCAATACAATGGCGTC
GTGGAGCGCGTTCTGGGGCTACTGCGCGACAAGACCGTGGCCCTGTTGCA
CGGTGTAATGGGGGGTAAGAGCGACCGTCTATGGGCGGAAGCTATGGCGT
ACGCATGCGATATGCGGAAC

Coding sequence (CDS) from alignment at H-elongata_contig124641:240..659+

>mRNA_H-elongata_contig124641.1856.1 ID=mRNA_H-elongata_contig124641.1856.1|Name=mRNA_H-elongata_contig124641.1856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig124641:240..659+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCAA
GCACAAGAGCGACGCCACGAATGCGTTAAGAGACATAATCAACGACTACT
TCACGCCCGAGGGCCTCAAGATTGTCGTCATCCGCACGGACAGTGGGGGA
GAATAAATGCTGTGCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTT
CCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGAGACATAATCAACG
ACTACTTCACGCCCGAGGGCCTCAAGATTGTCGTCATCCGCACGGACAGT
GGGGGAGAATAA