mRNA_H-elongata_contig124618.1854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124618.1854.1
Unique NamemRNA_H-elongata_contig124618.1854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A6H5L3W2_9PHAE (PPIP5K2_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.710e-24
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   34 MNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRK 192
            M  P+E+WP+CDCLVAFYS GFPS KA+AYV+LRRPYALNNLEM++VLHDRRK
Sbjct:    1 MEAPVEEWPLCDCLVAFYSHGFPSDKAKAYVKLRRPYALNNLEMQDVLHDRRK 53
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BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: D7G115_ECTSI (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G115_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.670e-23
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   34 MNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKVCFVVE 210
            M  P+E+WP+CDCLVAFYS GFPS KA+AYV+LRRPYALNNLEM++VLHDRRKV  ++E
Sbjct:    1 MEAPVEEWPLCDCLVAFYSHGFPSDKAKAYVKLRRPYALNNLEMQDVLHDRRKVYDLLE 59
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BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A482SGJ6_9ARCH (PPIP5K2_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGJ6_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 1.790e-22
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKVCFVVE 210
            +VV FGDDCI+N PIE WP+ + L+AFYS  FP+ KA  YV+LR+PY +N+L+M+ VL DRRKV  ++E
Sbjct:   50 EVVYFGDDCILNSPIESWPVVEVLIAFYSNKFPTQKALQYVKLRKPYMINDLDMQEVLKDRRKVYDMLE 118
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BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: W7T841_9STRA (PPIP5K2_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T841_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.800e-22
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            QV++FGD CI+ +P E WP CD L+AFYSTGFP  KA AY EL +PY LN+L M+  LHDRR V
Sbjct:  130 QVLIFGDQCILQQPPEQWPFCDALIAFYSTGFPLAKAEAYAELVKPYVLNDLSMQRALHDRRCV 193
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BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A1R3I4B2_9ROSI (Putative acid phosphatase n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I4B2_9ROSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.610e-22
Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            +++ FGD  I+ +PIE WP+CDCL+AFYS+G+P  KA AY  LR+P+ +N LE +++LHDRRKV
Sbjct:   15 EIIHFGDKVILEEPIESWPICDCLIAFYSSGYPLEKAEAYAALRKPFLVNELEPQHLLHDRRKV 78
[Close]
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A812WQK1_SYMMI (VIP1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WQK1_SYMMI)

HSP 1 Score: 94.4 bits (233), Expect = 4.940e-22
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    7 VVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKVCFVVE 210
            V +FGD+CI+N+P+EDWP+ +CL+AFYS+G+P  KA  YVELR+P+ +N+LEM+  L DRR V  V++
Sbjct:   24 VKIFGDECILNEPVEDWPVVECLIAFYSSGYPLEKALEYVELRKPFLINDLEMQRTLQDRRLVYEVLQ 91
[Close]
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A2K1KX60_PHYPA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KX60_PHYPA)

HSP 1 Score: 97.4 bits (241), Expect = 5.120e-22
Identity = 36/64 (56.25%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            ++++FGD  I+++P+E WP+CDCL+AFYSTG+P  KA AY  LR+PY +N L+++++LHDRRKV
Sbjct:   57 EIIIFGDRVILHEPVEKWPLCDCLIAFYSTGYPLSKAEAYAALRKPYLINELKLQHLLHDRRKV 120
[Close]
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A7I4AB86_PHYPA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4AB86_PHYPA)

HSP 1 Score: 97.1 bits (240), Expect = 6.940e-22
Identity = 35/64 (54.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            ++++FGD  ++++P+E WP+CDCL+AFYSTG+P  KA AY  LR+PY +N L+++++LHDRRKV
Sbjct:   55 EIIIFGDHVVLHEPVEKWPLCDCLIAFYSTGYPLDKAEAYAALRKPYLINQLKLQHLLHDRRKV 118
[Close]
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A2K1JQN5_PHYPA (Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQN5_PHYPA)

HSP 1 Score: 97.1 bits (240), Expect = 6.990e-22
Identity = 35/64 (54.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            ++++FGD  ++++P+E WP+CDCL+AFYSTG+P  KA AY  LR+PY +N L+++++LHDRRKV
Sbjct:   55 EIIIFGDHVVLHEPVEKWPLCDCLIAFYSTGYPLDKAEAYAALRKPYLINQLKLQHLLHDRRKV 118
[Close]
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Match: A0A5J5AMJ9_9ASTE (PPIP5K2_N domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AMJ9_9ASTE)

HSP 1 Score: 92.8 bits (229), Expect = 7.720e-22
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    4 QVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYALNNLEMENVLHDRRKV 195
            +++ FGD  I+  PIE WP+CDCL+AFYS+G+P  KA AY  LRRP+ +N LE +++LHDRRKV
Sbjct:   47 EIIYFGDKVILEDPIESWPICDCLIAFYSSGYPLEKAEAYAVLRRPFLVNELEQQHLLHDRRKV 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124618.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3W2_9PHAE5.710e-2479.25PPIP5K2_N domain-containing protein n=1 Tax=Ectoca... [more]
D7G115_ECTSI1.670e-2374.58Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A482SGJ6_9ARCH1.790e-2257.97PPIP5K2_N domain-containing protein n=1 Tax=archae... [more]
W7T841_9STRA1.800e-2262.50PPIP5K2_N domain-containing protein n=2 Tax=Monodo... [more]
A0A1R3I4B2_9ROSI4.610e-2256.25Putative acid phosphatase n=1 Tax=Corchorus olitor... [more]
A0A812WQK1_SYMMI4.940e-2255.88VIP1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A2K1KX60_PHYPA5.120e-2256.25Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A7I4AB86_PHYPA6.940e-2254.69Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A2K1JQN5_PHYPA6.990e-2254.69Inositol hexakisphosphate and diphosphoinositol-pe... [more]
A0A5J5AMJ9_9ASTE7.720e-2257.81PPIP5K2_N domain-containing protein n=1 Tax=Nyssa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124618contigH-elongata_contig124618:1401..1610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7G115
KEGG rclassRC00002
KEGG koko:K13024
KEGG ReactionR05799,R08964
KEGG Pathwayko04070,map04070
EggNOG free text desc.diphosphoinositol-pentakisphosphate kinase activity
EggNOG OGsKOG1057@1,KOG1057@2759
EC2.7.4.24
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.131157-CDS-H-elongata_contig124618:1400..16101622929735.131157-CDS-H-elongata_contig124618:1400..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124618 1401..1610 -
1691679137.589395-CDS-H-elongata_contig124618:1400..16101691679137.589395-CDS-H-elongata_contig124618:1400..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124618 1401..1610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124618.1854.1prot_H-elongata_contig124618.1854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124618 1401..1610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124618.1854.1

>prot_H-elongata_contig124618.1854.1 ID=prot_H-elongata_contig124618.1854.1|Name=mRNA_H-elongata_contig124618.1854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MQVVVFGDDCIMNKPIEDWPMCDCLVAFYSTGFPSGKARAYVELRRPYAL
NNLEMENVLHDRRKVCFVVE
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mRNA from alignment at H-elongata_contig124618:1401..1610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124618.1854.1 ID=mRNA_H-elongata_contig124618.1854.1|Name=mRNA_H-elongata_contig124618.1854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig124618:1401..1610- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGGTGGTCTTCGGCGACGACTGCATCATGAACAAGCCCATCGA
GGACTGGCCGATGTGCGACTGTCTGGTGGCATTTTATTCTACTGGGTTCC
CTAGCGGCAAGGCCAGGGCGTATGTGGAGCTGCGACGGCCTTACGCCCTC
AACAACCTCGAGATGGAAAACGTCTTGCATGACAGGAGGAAGGTATGTTT
TGTGGTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig124618:1401..1610-

>mRNA_H-elongata_contig124618.1854.1 ID=mRNA_H-elongata_contig124618.1854.1|Name=mRNA_H-elongata_contig124618.1854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig124618:1401..1610- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGGTGGTCTTCGGCGACGACTGCATCATGAACAAGCCCATCGA
GGACTGGCCGATGTGCGACTGTCTGGTGGCATTTTATTCTACTGGGTTCC
CTAGCGGCAAGGCCAGGGCGTATGTGGAGCTGCGACGGCCTTACGCCCTC
AACAACCTCGAGATGGAAAACGTCTTGCATGACAGGAGGAAGGTATGTTT
TGTGGTCGAGATGCAGGTGGTGGTCTTCGGCGACGACTGCATCATGAACA
AGCCCATCGAGGACTGGCCGATGTGCGACTGTCTGGTGGCATTTTATTCT
ACTGGGTTCCCTAGCGGCAAGGCCAGGGCGTATGTGGAGCTGCGACGGCC
TTACGCCCTCAACAACCTCGAGATGGAAAACGTCTTGCATGACAGGAGGA
AGGTATGTTTTGTGGTCGAG
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