mRNA_H-elongata_contig124610.1853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124610.1853.1
Unique NamemRNA_H-elongata_contig124610.1853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: D7FJF9_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF9_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 8.720e-128
Identity = 204/278 (73.38%), Postives = 220/278 (79.14%), Query Frame = 1
Query:   22 APCGSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFEDFHHCARMPTSAPGGRLS---SSKRGPKGSCPMGLLAS-----PRDEGVRNGDVAAG 831
            APCGSLE+FL  R+RMTELDAKRVVRQLL+GL+YLHKSG+VHCDLKPANILFSDIDQG NT  D +            PRAQ + PPASLSGLVVKICDFGH+RKVPDCRYYKFT DINKIPFHMFKHTGT+GFVAPEVL S+PYGKAAD WSTGCML QMLTG+MPW+PSRACL RPLSTSG  W  IS  AKSLVEDLLTADQ  RADVEQAT H WFE  HHCARMPTSAPGG+ S   +  RG   S P  LL+       RDEGV +GD AAG
Sbjct:  607 APCGSLEEFLNARWRMTELDAKRVVRQLLDGLAYLHKSGVVHCDLKPANILFSDIDQG-NTARDSALP--------VTPRAQ-VAPPASLSGLVVKICDFGHARKVPDCRYYKFTRDINKIPFHMFKHTGTEGFVAPEVLLSKPYGKAADMWSTGCMLAQMLTGKMPWIPSRACLQRPLSTSGVCWSHISEPAKSLVEDLLTADQEFRADVEQATHHSWFEGIHHCARMPTSAPGGKASPMFAPVRGRIASMPAVLLSPRSLTPTRDEGVLSGDAAAG 874          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A835YNM8_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM8_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.580e-64
Identity = 101/237 (42.62%), Postives = 136/237 (57.38%), Query Frame = 1
Query:   22 APCGSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFEDFHHCARMPTSAPGGR 732
            A CGSL+  L++R R+TEL+AK V++Q+L+ + Y H  G+                                            + P S+SGLVVK+CDFGHSRKVPD +Y+K+TGDI+KIP H+F+HTGT G+++PE+L    YGKAAD WS G +++++L+G +PW   R CL  PL+     W  IS +AK L+  LL  DQ +R    QA  H WF    HC  MPT APGGR
Sbjct:  149 ATCGSLDDLLFVRRRLTELEAKIVLKQVLDAVQYCHAQGLQ-------------------------------------------SSPLSISGLVVKLCDFGHSRKVPDVKYFKYTGDIHKIPHHLFQHTGTQGYISPEILLQNSYGKAADMWSCGVLMHKLLSGAVPWNSPRGCLQEPLALKARLWNDISDEAKDLLRGLLEVDQELRLSASQALNHAWFAGIEHCTAMPTYAPGGR 342          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: D7G9F4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9F4_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 1.800e-62
Identity = 112/230 (48.70%), Postives = 152/230 (66.09%), Query Frame = 1
Query:   25 PCGSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGS----DKSL-PRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFH-MFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFEDFHH 696
            PCG LE+ LYLR R+TE++AKRVV QLLEG+SYLH  GIVHCD+KP N+LF+      +  T L + G  K S    +KS  P  +     +S +G + K+CDFG S KVPD R+YK TGDINKIP+  +F   GT G++APE++  +P+GK AD WS G MLYQM++GR+P++P+R C+ +P+S     W  ++   KSL+E LL  + + R    QA QHPW +  HH
Sbjct:  716 PCGDLEKMLYLRGRLTEIEAKRVVMQLLEGVSYLHSKGIVHCDIKPQNLLFAPDPDNPDAPT-LKAAGSSKSSVAESEKSTGPEKRGKQQVSSPAGRLAKLCDFGISCKVPDVRFYKQTGDINKIPWSGLF---GTGGYIAPEIMSQQPFGKPADLWSVGVMLYQMISGRLPFIPARKCVTKPVSFPAAVWADVNVGVKSLIEGLLEKEPSQRLTAAQALQHPWVQTIHH 941          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A7S3XRG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRG1_HETAK)

HSP 1 Score: 206 bits (524), Expect = 5.590e-61
Identity = 114/230 (49.57%), Postives = 144/230 (62.61%), Query Frame = 1
Query:   22 APCGSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPA-----SLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFEDFHH 696
            A CG LE+ L  R  +TE++AKRVV+QLLEGL  +H+  +VH DLKPANILF+  D  V   T  SS G            QA TP A     S S L++KICDFG SRKVPD RY+K TGD+NKIPF     TGT+ ++APE+L  EPYGK AD WS G ++Y++L G MP++P+RAC  R  +  G  W K S  A  +V  LLT + + R  V QA QHPW +  +H
Sbjct:  131 ADCGDLEKMLQTRRTLTEVEAKRVVKQLLEGLKNVHEQDLVHLDLKPANILFAH-DPEVRCDTCGSSLG----------EWQAKTPGAPPNHNSPSALLLKICDFGMSRKVPDVRYFKATGDVNKIPFTAL--TGTEQYMAPEILLKEPYGKPADLWSVGVLMYKLLAGIMPFIPTRACFARKPAFPGYMWDKFSLLAPDMVGKLLTVNPDERLTVAQALQHPWLDSVYH 347          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A835ZDX2_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.290e-58
Identity = 105/247 (42.51%), Postives = 152/247 (61.54%), Query Frame = 1
Query:   43 QFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGK--------------GSDKSLPRAQAITPP-ASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFEDFHHCAR-----MPTSAP 723
            + +Y+R  + E++AKRV +QLL+ ++YLH  GIVHCD+KP N+LF+        T+  SS    +              G++   P + + T    S +GL+ K+CDFG SRKVPD +++K TGD+NKIPF      GT GF+APE+++ +P+GKAAD WS G M+YQML GRMP+MP+RACL RP S  G +W+ +S +AK L+  +L  D + R    +A +HPW E   +        +PT+AP
Sbjct:  529 EMIYMRGFLKEIEAKRVAKQLLQAVAYLHAKGIVHCDIKPQNLLFTHDTTNTTPTSAASSPPSDRDRAHSAMQLGDFANGAEPPPPESPSSTDAFTSPAGLLAKLCDFGLSRKVPDIKFFKLTGDVNKIPFSTL--CGTGGFIAPEIMRQQPFGKAADMWSVGVMIYQMLCGRMPFMPARACLERPPSYLGATWRNVSEEAKDLINKMLERDPSKRLTAAEALEHPWLESVQYLESGFPHFVPTAAP 773          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A4D9DE44_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE44_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.090e-51
Identity = 91/218 (41.74%), Postives = 137/218 (62.84%), Query Frame = 1
Query:   31 GSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFE 684
            G+LEQ L +R ++TEL+   VV+Q+L+ +  LH+SG++HCDLKP N+LFSD D G+     L++   G      L R    T P    G+++++CDFG SRKVPD R++K TGDI ++PF      GT GF+ PE+++ +P+GK  D W+ G + Y++L G +P++P   CL +P+   G +W+ IS  A+  +  LLT DQN RA   +A  H W +
Sbjct:  690 GNLEQMLQIRRKLTELETMWVVKQILDAVDLLHRSGVLHCDLKPQNLLFSDFDDGIA----LAALSKGNQQASQLRRTWMYTSPL---GMILRVCDFGLSRKVPDVRFFKQTGDIYRVPFSRI--CGTGGFIPPEIIRKQPFGKPTDMWAVGVICYRILAGTLPFIPPTKCLDQPVRFQGRAWEGISKDAQHFIARLLTPDQNKRATAREALGHRWLQ 898          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A397B3Z2_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B3Z2_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.190e-47
Identity = 91/218 (41.74%), Postives = 129/218 (59.17%), Query Frame = 1
Query:   31 GSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFE 684
            G+L+Q L    R  E  A ++  Q++ G+ ++H+SG+VHCD+KP N+L +D   G +T        GG  +      A +  P      L V++CDFG S KVPD R++K TGD++K+PF+    TG+ G++APE+ +S+PYGK  D WS G +LY+MLTG  P+ P   C+  P   +   WKK SA+A  LV  LL  D   R  VEQA  HPWF+
Sbjct:  232 GTLKQLLMKERRFPEALAAKLAHQIVRGIFFMHESGVVHCDIKPENVLPTDA-AGPHT--------GGSSA------ATSNNPDVKAWDLKVELCDFGLSVKVPDVRFFKHTGDVHKVPFNGL--TGSVGYMAPELFQSQPYGKPVDLWSVGIILYEMLTGYQPFSPPSICVDEPAEFTPRIWKKFSAEAADLVAHLLERDPTKRFTVEQALTHPWFD 432          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A6G0XFT2_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFT2_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.540e-47
Identity = 87/218 (39.91%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   31 GSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFE 684
            G+L+Q L    R  E  A ++  Q++ G+ ++H+SG+VHCD+KP N+L +D  +  +   D+ +                         L V++CDFG S KVPD R+YK TGD++K+PF+    TG+ G++APE+ +S+PYGK  D WS G +LY+MLTG  P+ P   C+  P   +   WKK SA+AK LV  LL  D   R   EQA  HPWF+
Sbjct:  246 GTLKQLLLRERRFPEALAAKLAHQIVRGIFFMHESGVVHCDVKPENVLLTDSKEPSSENNDVKAW-----------------------DLQVELCDFGLSVKVPDVRFYKQTGDVHKVPFNGL--TGSVGYMAPELFQSQPYGKPVDLWSVGIILYEMLTGYQPFYPPSVCVDEPAEFTPRIWKKFSAEAKDLVSHLLERDPAKRFTAEQALTHPWFD 438          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: F0W2J1_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2J1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.600e-47
Identity = 89/221 (40.27%), Postives = 131/221 (59.28%), Query Frame = 1
Query:   31 GSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPAS---LSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFE 684
            G+L   +  + R++E  A ++ +Q++  + +LH  G+VHCDLKP N+L +D   G   T ++       G+   L   +A   P +   +  L V++CDFG S KVPD R++K TGD++K+PF     TGT G++APE+L+ +PYGK  D WS G ++Y+MLTG  P+ P RAC+   +     +W KIS QAK LV+ LL  D   R   EQA  H WF+
Sbjct:  430 GNLNALMQRKRRLSEPLAAKLTQQIVRAVYFLHDLGVVHCDLKPENVLLTDAKPGNQETHEI-------GTGDRLRHLEAELDPHADVRICDLQVELCDFGLSIKVPDARFFKLTGDVHKVPFTQV--TGTPGYIAPELLQRQPYGKPVDMWSIGIIIYEMLTGYRPFYPPRACMEEDVDFGDTTWHKISPQAKHLVQHLLDRDPMKRFTAEQALSHEWFD 641          
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Match: A0A8K1CHE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHE0_PYTOL)

HSP 1 Score: 175 bits (443), Expect = 1.350e-46
Identity = 87/218 (39.91%), Postives = 129/218 (59.17%), Query Frame = 1
Query:   31 GSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHCDLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGLVVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSEPYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQAKSLVEDLLTADQNIRADVEQATQHPWFE 684
            G+L+  +  + R+ E  A ++ +Q++  + +LH +G++HCDLKP NIL +D       + D +S  G +GS   LP +        +  L V++CDFG S KVPD R+YK TGD++K+PF     TGT G++APE+L+ +PYGK  D WS G ++Y+MLTG  P+ P  AC+      +   W  +SAQAK LV+ LL +D   R     A  H WF+
Sbjct:  468 GNLKALMQRKRRLPEALAAKLAQQIVRAVFFLHDTGVLHCDLKPENILLTDARSTNQESNDSNSPKGRRGS---LPSSLDPHADVKVGDLQVELCDFGLSVKVPDVRFYKLTGDVHKVPFTGV--TGTPGYIAPELLQQQPYGKPVDMWSVGIVIYEMLTGYQPFYPPHACIDEKADFNDRVWSSVSAQAKDLVQGLLESDPTKRLTAADALSHGWFD 680          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124610.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF9_ECTSI8.720e-12873.38Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YNM8_9STRA3.580e-6442.62Kinase-like domain-containing protein (Fragment) n... [more]
D7G9F4_ECTSI1.800e-6248.70Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S3XRG1_HETAK5.590e-6149.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZDX2_9STRA4.290e-5842.51Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A4D9DE44_9STRA1.090e-5141.74Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A397B3Z2_9STRA1.190e-4741.74Protein kinase domain-containing protein (Fragment... [more]
A0A6G0XFT2_9STRA2.540e-4739.91Protein kinase domain-containing protein n=1 Tax=A... [more]
F0W2J1_9STRA4.600e-4740.27Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A8K1CHE0_PYTOL1.350e-4639.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124610contigH-elongata_contig124610:1052..1882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.0
Seed ortholog evalue1.5e-107
Seed eggNOG ortholog2880.D7FJF9
Preferred namedkf-2
KEGG koko:K04458,ko:K06070
KEGG Pathwayko04010,ko04015,ko04925,map04010,map04015,map04925
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007186,GO:0007200,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009605,GO:0009607,GO:0009617,GO:0009898,GO:0009987,GO:0010259,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0032386,GO:0032387,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0035556,GO:0036211,GO:0042306,GO:0042308,GO:0042742,GO:0042802,GO:0042803,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045087,GO:0046822,GO:0046823,GO:0046983,GO:0048519,GO:0048856,GO:0050789,GO:0050794,GO:0050829,GO:0050830,GO:0050896,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0051704,GO:0051707,GO:0051716,GO:0060341,GO:0061695,GO:0065007,GO:0070201,GO:0071704,GO:0071944,GO:0089700,GO:0090087,GO:0090317,GO:0098542,GO:0098552,GO:0098562,GO:0140096,GO:1900180,GO:1900181,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1903827,GO:1903828,GO:1904589,GO:1904590,GO:1904950,GO:1990234
EggNOG free text desc.protein kinase D signaling
EggNOG OGsKOG4236@1,KOG4236@2759
EC2.7.11.13,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-14_006190.1
Exons1
Model size831
Cds size831
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.088934-CDS-H-elongata_contig124610:1051..18821622929735.088934-CDS-H-elongata_contig124610:1051..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124610 1052..1882 -
1691679137.5760922-CDS-H-elongata_contig124610:1051..18821691679137.5760922-CDS-H-elongata_contig124610:1051..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124610 1052..1882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124610.1853.1prot_H-elongata_contig124610.1853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124610 1052..1882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124610.1853.1

>prot_H-elongata_contig124610.1853.1 ID=prot_H-elongata_contig124610.1853.1|Name=mRNA_H-elongata_contig124610.1853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MKSPLYPAPCGSLEQFLYLRYRMTELDAKRVVRQLLEGLSYLHKSGIVHC
DLKPANILFSDIDQGVNTTTDLSSTGGGKGSDKSLPRAQAITPPASLSGL
VVKICDFGHSRKVPDCRYYKFTGDINKIPFHMFKHTGTDGFVAPEVLKSE
PYGKAADTWSTGCMLYQMLTGRMPWMPSRACLHRPLSTSGPSWKKISAQA
KSLVEDLLTADQNIRADVEQATQHPWFEDFHHCARMPTSAPGGRLSSSKR
GPKGSCPMGLLASPRDEGVRNGDVAAG
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mRNA from alignment at H-elongata_contig124610:1052..1882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124610.1853.1 ID=mRNA_H-elongata_contig124610.1853.1|Name=mRNA_H-elongata_contig124610.1853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=831bp|location=Sequence derived from alignment at H-elongata_contig124610:1052..1882- (Himanthalia elongata Himel1 dioecious)
ATGAAATCACCTTTGTACCCAGCGCCCTGCGGATCTTTGGAGCAATTCCT GTACCTTCGGTACCGTATGACCGAGCTGGATGCGAAGCGCGTGGTCCGCC AGCTGCTGGAAGGCCTGTCATACCTGCACAAGTCCGGGATCGTGCATTGT GACCTCAAACCGGCCAACATCCTCTTCTCCGATATTGATCAGGGTGTGAA CACAACAACCGATCTCAGTAGCACAGGGGGCGGGAAAGGTTCAGACAAGT CCTTGCCAAGGGCTCAGGCAATCACGCCGCCTGCTTCGCTCAGCGGACTG GTCGTGAAAATCTGCGACTTCGGCCACTCGCGGAAGGTGCCCGACTGCCG GTACTACAAGTTCACGGGCGACATCAACAAGATTCCCTTCCACATGTTCA AGCACACGGGGACTGACGGTTTCGTGGCCCCCGAGGTGCTCAAATCGGAG CCCTACGGTAAGGCCGCAGACACGTGGTCAACCGGGTGCATGTTGTACCA GATGCTGACGGGCCGCATGCCGTGGATGCCGTCGCGTGCGTGCCTTCACC GGCCCCTTTCCACATCTGGCCCATCCTGGAAGAAGATCAGCGCCCAGGCT AAGTCACTCGTGGAGGACTTGCTTACCGCCGACCAGAATATCCGTGCCGA CGTGGAGCAGGCAACGCAACATCCGTGGTTCGAGGACTTCCACCACTGTG CGAGGATGCCGACGTCCGCCCCAGGGGGGAGACTTTCTTCGTCGAAGAGG GGGCCCAAAGGCTCGTGCCCGATGGGTTTGTTGGCTTCCCCGCGAGACGA AGGCGTGCGTAACGGAGACGTAGCTGCGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig124610:1052..1882-

>mRNA_H-elongata_contig124610.1853.1 ID=mRNA_H-elongata_contig124610.1853.1|Name=mRNA_H-elongata_contig124610.1853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig124610:1052..1882- (Himanthalia elongata Himel1 dioecious)
ATGAAATCACCTTTGTACCCAGCGCCCTGCGGATCTTTGGAGCAATTCCT
GTACCTTCGGTACCGTATGACCGAGCTGGATGCGAAGCGCGTGGTCCGCC
AGCTGCTGGAAGGCCTGTCATACCTGCACAAGTCCGGGATCGTGCATTGT
GACCTCAAACCGGCCAACATCCTCTTCTCCGATATTGATCAGGGTGTGAA
CACAACAACCGATCTCAGTAGCACAGGGGGCGGGAAAGGTTCAGACAAGT
CCTTGCCAAGGGCTCAGGCAATCACGCCGCCTGCTTCGCTCAGCGGACTG
GTCGTGAAAATCTGCGACTTCGGCCACTCGCGGAAGGTGCCCGACTGCCG
GTACTACAAGTTCACGGGCGACATCAACAAGATTCCCTTCCACATGTTCA
AGCACACGGGGACTGACGGTTTCGTGGCCCCCGAGGTGCTCAAATCGGAG
CCCTACGGTAAGGCCGCAGACACGTGGTCAACCGGGTGCATGTTGTACCA
GATGCTGACGGGCCGCATGCCGTGGATGCCGTCGCGTGCGTGCCTTCACC
GGCCCCTTTCCACATCTGGCCCATCCTGGAAGAAGATCAGCGCCCAGGCT
AAGTCACTCGTGGAGGACTTGCTTACCGCCGACCAGAATATCCGTGCCGA
CGTGGAGCAGGCAACGCAACATCCGTGGTTCGAGGACTTCCACCACTGTG
CGAGGATGCCGACGTCCGCCCCAGGGGGGAGACTTTCTTCGTCGAAGAGG
GGGCCCAAAGGCTCGTGCCCGATGGGTTTGTTGGCTTCCCCGCGAGACGA
AGGCGTGCGTAACGGAGACGTAGCTGCGGGTATGAAATCACCTTTGTACC
CAGCGCCCTGCGGATCTTTGGAGCAATTCCTGTACCTTCGGTACCGTATG
ACCGAGCTGGATGCGAAGCGCGTGGTCCGCCAGCTGCTGGAAGGCCTGTC
ATACCTGCACAAGTCCGGGATCGTGCATTGTGACCTCAAACCGGCCAACA
TCCTCTTCTCCGATATTGATCAGGGTGTGAACACAACAACCGATCTCAGT
AGCACAGGGGGCGGGAAAGGTTCAGACAAGTCCTTGCCAAGGGCTCAGGC
AATCACGCCGCCTGCTTCGCTCAGCGGACTGGTCGTGAAAATCTGCGACT
TCGGCCACTCGCGGAAGGTGCCCGACTGCCGGTACTACAAGTTCACGGGC
GACATCAACAAGATTCCCTTCCACATGTTCAAGCACACGGGGACTGACGG
TTTCGTGGCCCCCGAGGTGCTCAAATCGGAGCCCTACGGTAAGGCCGCAG
ACACGTGGTCAACCGGGTGCATGTTGTACCAGATGCTGACGGGCCGCATG
CCGTGGATGCCGTCGCGTGCGTGCCTTCACCGGCCCCTTTCCACATCTGG
CCCATCCTGGAAGAAGATCAGCGCCCAGGCTAAGTCACTCGTGGAGGACT
TGCTTACCGCCGACCAGAATATCCGTGCCGACGTGGAGCAGGCAACGCAA
CATCCGTGGTTCGAGGACTTCCACCACTGTGCGAGGATGCCGACGTCCGC
CCCAGGGGGGAGACTTTCTTCGTCGAAGAGGGGGCCCAAAGGCTCGTGCC
CGATGGGTTTGTTGGCTTCCCCGCGAGACGAAGGCGTGCGTAACGGAGAC
GTAGCTGCGGGT
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