mRNA_H-elongata_contig124579.1850.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124579.1850.1
Unique NamemRNA_H-elongata_contig124579.1850.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124579.1850.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.680e-38
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 FAARFFVTRLGFMRRKCRHMMAFTSDRLYILKFDDGKAKASYPLKTVQLASSDKVNQEKGIILTSDIGNVRHSYKFPNRTSLLPAFYELQDAAQ 282
            FAARFFVTRLGFMRRKCR MMAFTSDRL+I++ DDGKAKASYPLK+VQLA SDK    KGIILTSDIGNVRHS+K  NRTSLL AF ELQDAA+
Sbjct:   79 FAARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAKASYPLKSVQLAPSDK---GKGIILTSDIGNVRHSFKCRNRTSLLAAFAELQDAAR 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124579.1850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI2.680e-3881.91RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124579contigH-elongata_contig124579:1486..1770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.8359344-CDS-H-elongata_contig124579:1485..17701622929734.8359344-CDS-H-elongata_contig124579:1485..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 1486..1770 -
1691679137.4961014-CDS-H-elongata_contig124579:1485..17701691679137.4961014-CDS-H-elongata_contig124579:1485..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124579 1486..1770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124579.1850.1prot_H-elongata_contig124579.1850.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124579 1486..1770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124579.1850.1

>prot_H-elongata_contig124579.1850.1 ID=prot_H-elongata_contig124579.1850.1|Name=mRNA_H-elongata_contig124579.1850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
FAARFFVTRLGFMRRKCRHMMAFTSDRLYILKFDDGKAKASYPLKTVQLA
SSDKVNQEKGIILTSDIGNVRHSYKFPNRTSLLPAFYELQDAAQ*
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mRNA from alignment at H-elongata_contig124579:1486..1770-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124579.1850.1 ID=mRNA_H-elongata_contig124579.1850.1|Name=mRNA_H-elongata_contig124579.1850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig124579:1486..1770- (Himanthalia elongata Himel1 dioecious)
TTCGCCGCACGTTTCTTCGTGACAAGGCTCGGGTTTATGCGGCGCAAGTG
TCGACATATGATGGCCTTCACGTCGGACAGGCTGTACATCTTAAAATTTG
ATGATGGGAAAGCCAAGGCAAGTTATCCCCTCAAGACCGTTCAGCTTGCA
TCTTCGGACAAGGTCAATCAGGAGAAGGGCATCATTTTGACAAGCGATAT
TGGCAATGTACGACACTCCTACAAGTTCCCGAACCGTACCAGTCTCCTTC
CGGCATTCTATGAGCTCCAGGACGCAGCGCAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig124579:1486..1770-

>mRNA_H-elongata_contig124579.1850.1 ID=mRNA_H-elongata_contig124579.1850.1|Name=mRNA_H-elongata_contig124579.1850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig124579:1486..1770- (Himanthalia elongata Himel1 dioecious)
TTCGCCGCACGTTTCTTCGTGACAAGGCTCGGGTTTATGCGGCGCAAGTG
TCGACATATGATGGCCTTCACGTCGGACAGGCTGTACATCTTAAAATTTG
ATGATGGGAAAGCCAAGGCAAGTTATCCCCTCAAGACCGTTCAGCTTGCA
TCTTCGGACAAGGTCAATCAGGAGAAGGGCATCATTTTGACAAGCGATAT
TGGCAATGTACGACACTCCTACAAGTTCCCGAACCGTACCAGTCTCCTTC
CGGCATTCTATGAGCTCCAGGACGCAGCGCAGTAGTTCGCCGCACGTTTC
TTCGTGACAAGGCTCGGGTTTATGCGGCGCAAGTGTCGACATATGATGGC
CTTCACGTCGGACAGGCTGTACATCTTAAAATTTGATGATGGGAAAGCCA
AGGCAAGTTATCCCCTCAAGACCGTTCAGCTTGCATCTTCGGACAAGGTC
AATCAGGAGAAGGGCATCATTTTGACAAGCGATATTGGCAATGTACGACA
CTCCTACAAGTTCCCGAACCGTACCAGTCTCCTTCCGGCATTCTATGAGC
TCCAGGACGCAGCGCAGTAG
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