mRNA_H-elongata_contig12455.1847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12455.1847.1
Unique NamemRNA_H-elongata_contig12455.1847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12455.1847.1 vs. uniprot
Match: D8LJB0_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.390e-10
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   64 QKFKLSGVSLRKDSEVSISHGKFEASAGKVTFTDVGSTNGTEIDG 198
            +KFK  G+SLR+DSEVSI+HG F  S G+VT+ D GSTNGTE+DG
Sbjct:  424 KKFKNHGISLRRDSEVSITHGMFMNSGGRVTYMDNGSTNGTEVDG 468
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BLAST of mRNA_H-elongata_contig12455.1847.1 vs. uniprot
Match: A0A7S4A7S8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7S8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.260e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   64 QKFKLSGVSLRKDSEVSISHGKFEASAGKVTFTDVGSTNGTEIDG 198
            +KF+  G+SL KD+EVS +H K E    ++   DVGSTNGT IDG
Sbjct:  124 KKFREKGISLPKDNEVSTTHAKIELKNDEIVLVDVGSTNGTSIDG 168
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BLAST of mRNA_H-elongata_contig12455.1847.1 vs. uniprot
Match: A0A6U0IDX9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IDX9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.390e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   64 QKFKLSGVSLRKDSEVSISHGKFEASAGKVTFTDVGSTNGTEIDG 198
            +KF+  G+S+  D EVS +H K E   GK  +TDVGSTNGT ++G
Sbjct:   34 KKFRDRGISMPNDGEVSTTHAKVEVKGGKAYYTDVGSTNGTLLNG 78
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BLAST of mRNA_H-elongata_contig12455.1847.1 vs. uniprot
Match: A0A1E7EYX0_9STRA (FHA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYX0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.410e-5
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   58 ENQKFKLSGVSLRKDSEVSISHGKFE-----ASAGKVTFTDVGSTNGTEIDG 198
            + +KFK  G+SL KD E S +HG+FE         K  F DVGSTNGT+IDG
Sbjct:  167 QGRKFKQKGISLPKDLECSTTHGRFEYTNTTGEGPKFYFVDVGSTNGTQIDG 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12455.1847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJB0_ECTSI9.390e-1066.67FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4A7S8_9STRA9.260e-653.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U0IDX9_9STRA9.390e-651.11Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7EYX0_9STRA2.410e-551.92FHA domain-containing protein n=1 Tax=Fragilariops... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12455contigH-elongata_contig12455:53..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog2880.D8LJB0
EggNOG free text desc.FHA domain
EggNOG OGs2E05Y@1,2S7MG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.6873012-CDS-H-elongata_contig12455:52..2531622929734.6873012-CDS-H-elongata_contig12455:52..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12455 53..253 +
1691679137.4565408-CDS-H-elongata_contig12455:52..2531691679137.4565408-CDS-H-elongata_contig12455:52..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12455 53..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12455.1847.1prot_H-elongata_contig12455.1847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12455 53..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12455.1847.1

>prot_H-elongata_contig12455.1847.1 ID=prot_H-elongata_contig12455.1847.1|Name=mRNA_H-elongata_contig12455.1847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QLALNPSINSSPSRSSYSRENQKFKLSGVSLRKDSEVSISHGKFEASAGK
VTFTDVGSTNGTEIDG*
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mRNA from alignment at H-elongata_contig12455:53..253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12455.1847.1 ID=mRNA_H-elongata_contig12455.1847.1|Name=mRNA_H-elongata_contig12455.1847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig12455:53..253+ (Himanthalia elongata Himel1 dioecious)
CAGCTCGCTTTGAATCCGTCAATCAATTCTAGCCCCTCACGCTCCTCATA
CTCGCGCGAAAACCAAAAGTTCAAGTTGAGCGGCGTTAGTCTGCGCAAGG
ACTCGGAAGTATCAATTTCTCACGGAAAGTTCGAAGCGTCCGCCGGCAAG
GTGACCTTCACGGATGTTGGCAGCACCAACGGCACCGAAATCGACGGGTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig12455:53..253+

>mRNA_H-elongata_contig12455.1847.1 ID=mRNA_H-elongata_contig12455.1847.1|Name=mRNA_H-elongata_contig12455.1847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig12455:53..253+ (Himanthalia elongata Himel1 dioecious)
CAGCTCGCTTTGAATCCGTCAATCAATTCTAGCCCCTCACGCTCCTCATA
CTCGCGCGAAAACCAAAAGTTCAAGTTGAGCGGCGTTAGTCTGCGCAAGG
ACTCGGAAGTATCAATTTCTCACGGAAAGTTCGAAGCGTCCGCCGGCAAG
GTGACCTTCACGGATGTTGGCAGCACCAACGGCACCGAAATCGACGGGTA
ACAGCTCGCTTTGAATCCGTCAATCAATTCTAGCCCCTCACGCTCCTCAT
ACTCGCGCGAAAACCAAAAGTTCAAGTTGAGCGGCGTTAGTCTGCGCAAG
GACTCGGAAGTATCAATTTCTCACGGAAAGTTCGAAGCGTCCGCCGGCAA
GGTGACCTTCACGGATGTTGGCAGCACCAACGGCACCGAAATCGACGGGT
AA
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