mRNA_H-elongata_contig124520.1843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124520.1843.1
Unique NamemRNA_H-elongata_contig124520.1843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: D7FT27_ECTSI (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT27_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.830e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 QVVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            QV+ N+AAFC CAG GQLFVFFIIKEFGSLVNVTVT+SRKFF
Sbjct:  260 QVIKNVAAFCLCAGTGQLFVFFIIKEFGSLVNVTVTVSRKFF 301
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A6H5KM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM40_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-14
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 QVVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            +V+ N+AAFC CAG GQLFVFFIIKEFGSLVNVTVT+SRKFF
Sbjct:  253 EVIKNVAAFCLCAGTGQLFVFFIIKEFGSLVNVTVTVSRKFF 294
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A835ZGA1_9STRA (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.900e-8
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    7 VVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            V+ +L AF  CA  GQ+F+F+IIKE+GSLVNVTVTI+RKFF
Sbjct:  244 VLPDLLAFSLCAATGQVFIFWIIKEWGSLVNVTVTITRKFF 284
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A7J7Q000_9CHLO (UAA transporter n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7Q000_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 2.890e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 TQVVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            T    ++A FC C  +GQLF+F  IK+FGSLVN  V  +RKFF
Sbjct:  243 TAAAWDVALFCLCGAVGQLFIFLTIKQFGSLVNTLVCTTRKFF 285
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A6A0AE63_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0AE63_HAELA)

HSP 1 Score: 48.9 bits (115), Expect = 4.070e-6
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   16 NLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            ++  FC C   GQLF+FF IK FGSLVN  V  +RKFF
Sbjct:   14 DVLVFCLCGAFGQLFIFFTIKTFGSLVNTLVCTTRKFF 51
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A250XF77_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XF77_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 5.240e-6
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   16 NLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            +L  FC C  +GQLF+FF IK FGSLVN  V  +RKFF
Sbjct:  212 DLILFCVCGAMGQLFIFFTIKTFGSLVNTLVCTTRKFF 249
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A0D2K4H8_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K4H8_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 5.420e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   16 NLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            ++  FC C  +GQLF+FF IK FGSLVN  +  +RKFF
Sbjct:  248 DILLFCVCGAVGQLFIFFTIKRFGSLVNTLICTTRKFF 285
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A2J7ZTT3_9CHLO (UDP-galactose/UDP-glucose transporter 3 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZTT3_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.010e-5
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    4 QVVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
              + ++  FC C  +GQLF+FF IK FGSL+N  V  +RKFF
Sbjct:  242 DALVDIVLFCICGAVGQLFIFFTIKTFGSLLNTLVCTTRKFF 283
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A812XIM6_SYMMI (Hut1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XIM6_SYMMI)

HSP 1 Score: 48.1 bits (113), Expect = 1.210e-5
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   16 NLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRK 123
            ++  FC CA +GQLF+F +I+EFGSL+ VT++I+RK
Sbjct:   40 DILMFCLCASVGQLFIFTVIQEFGSLLWVTISITRK 75
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BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Match: A0A835WCG6_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WCG6_CHLIN)

HSP 1 Score: 49.3 bits (116), Expect = 1.290e-5
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   16 NLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF 129
            +L  FC C  IGQLF+FF IK FGSLV   V  +RKFF
Sbjct:  182 DLVIFCLCGAIGQLFIFFTIKTFGSLVTTLVCTTRKFF 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124520.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FT27_ECTSI6.830e-1585.71UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A6H5KM40_9PHAE1.730e-1483.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGA1_9STRA1.900e-868.29UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A7J7Q000_9CHLO2.890e-653.49UAA transporter n=2 Tax=Scenedesmaceae TaxID=3086 ... [more]
A0A6A0AE63_HAELA4.070e-657.89Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A250XF77_9CHLO5.240e-660.53Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A0D2K4H8_9CHLO5.420e-655.26Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A2J7ZTT3_9CHLO1.010e-550.00UDP-galactose/UDP-glucose transporter 3 n=1 Tax=Te... [more]
A0A812XIM6_SYMMI1.210e-555.56Hut1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A835WCG6_CHLIN1.290e-560.53Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124520contigH-elongata_contig124520:1191..1319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D7FT27
Preferred nameHUT1
KEGG koko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009553,GO:0009555,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0023052,GO:0030173,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0072334,GO:0090481,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901264,GO:1901505
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter
Ec32 orthologEc-04_002590.1
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.2948136-CDS-H-elongata_contig124520:1190..13191622929734.2948136-CDS-H-elongata_contig124520:1190..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124520 1191..1319 -
1691679137.3317847-CDS-H-elongata_contig124520:1190..13191691679137.3317847-CDS-H-elongata_contig124520:1190..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124520 1191..1319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124520.1843.1prot_H-elongata_contig124520.1843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124520 1191..1319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124520.1843.1

>prot_H-elongata_contig124520.1843.1 ID=prot_H-elongata_contig124520.1843.1|Name=mRNA_H-elongata_contig124520.1843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
TQVVTNLAAFCACAGIGQLFVFFIIKEFGSLVNVTVTISRKFF
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mRNA from alignment at H-elongata_contig124520:1191..1319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124520.1843.1 ID=mRNA_H-elongata_contig124520.1843.1|Name=mRNA_H-elongata_contig124520.1843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig124520:1191..1319- (Himanthalia elongata Himel1 dioecious)
ACACAGGTGGTCACCAATCTCGCCGCGTTTTGTGCCTGCGCGGGCATAGG
ACAGCTGTTCGTGTTCTTCATCATCAAGGAGTTTGGTTCCCTGGTTAACG
TGACGGTCACAATCTCCCGCAAGTTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig124520:1191..1319-

>mRNA_H-elongata_contig124520.1843.1 ID=mRNA_H-elongata_contig124520.1843.1|Name=mRNA_H-elongata_contig124520.1843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig124520:1191..1319- (Himanthalia elongata Himel1 dioecious)
ACACAGGTGGTCACCAATCTCGCCGCGTTTTGTGCCTGCGCGGGCATAGG
ACAGCTGTTCGTGTTCTTCATCATCAAGGAGTTTGGTTCCCTGGTTAACG
TGACGGTCACAATCTCCCGCAAGTTCTTCACACAGGTGGTCACCAATCTC
GCCGCGTTTTGTGCCTGCGCGGGCATAGGACAGCTGTTCGTGTTCTTCAT
CATCAAGGAGTTTGGTTCCCTGGTTAACGTGACGGTCACAATCTCCCGCA
AGTTCTTC
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