mRNA_H-elongata_contig124510.1842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124510.1842.1
Unique NamemRNA_H-elongata_contig124510.1842.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124510.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124510contigH-elongata_contig124510:991..1491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124510.1842.1prot_H-elongata_contig124510.1842.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124510 1028..1408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.2088065-UTR-H-elongata_contig124510:990..10271622929734.2088065-UTR-H-elongata_contig124510:990..1027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124510 991..1027 +
1691679137.30208-UTR-H-elongata_contig124510:990..10271691679137.30208-UTR-H-elongata_contig124510:990..1027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124510 991..1027 +
1622929734.2455819-UTR-H-elongata_contig124510:1408..14911622929734.2455819-UTR-H-elongata_contig124510:1408..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124510 1409..1491 +
1691679137.320951-UTR-H-elongata_contig124510:1408..14911691679137.320951-UTR-H-elongata_contig124510:1408..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124510 1409..1491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.2197707-CDS-H-elongata_contig124510:1027..14081622929734.2197707-CDS-H-elongata_contig124510:1027..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124510 1028..1408 +
1691679137.3110244-CDS-H-elongata_contig124510:1027..14081691679137.3110244-CDS-H-elongata_contig124510:1027..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124510 1028..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124510.1842.1

>prot_H-elongata_contig124510.1842.1 ID=prot_H-elongata_contig124510.1842.1|Name=mRNA_H-elongata_contig124510.1842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSSSPQGTMVFPFRSGTARFTLLPLGRRGSKQSMCARTGDTSLAMCLRDA
IAPTIKCLNFTLTAALPLSFMALLTARLGMERGDGEAAESPRAAESQVDD
PPIQEPLPDFFLSMLLWCQWRKEIFR*
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mRNA from alignment at H-elongata_contig124510:991..1491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124510.1842.1 ID=mRNA_H-elongata_contig124510.1842.1|Name=mRNA_H-elongata_contig124510.1842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig124510:991..1491+ (Himanthalia elongata Himel1 dioecious)
GCGAAGACCGGAGCCAGTCCCGGCATCAAAGTGGTGGATGAGTAGCTCTC
CGCAGGGCACAATGGTCTTCCCCTTCCGCTCGGGAACAGCGCGCTTCACG
CTCTTGCCGTTGGGGAGAAGGGGCTCGAAGCAGTCTATGTGCGCGAGGAC
TGGGGACACCTCTCTTGCGATGTGCTTGCGTGACGCGATCGCGCCAACGA
TTAAATGTCTGAACTTCACCTTGACGGCGGCCTTGCCCTTGTCTTTCATG
GCCTTGTTGACGGCGAGATTAGGCATGGAGAGAGGCGATGGCGAAGCGGC
GGAATCTCCTCGAGCAGCGGAGTCACAGGTTGATGATCCGCCGATACAAG
AACCTTTGCCAGATTTTTTTTTGAGTATGTTGTTGTGGTGCCAGTGGCGA
AAGGAGATATTTAGATAGTGTGTGATGTATGTTAGGGGGGGCGCTCCGTG
TCGTAGCACGGCACCAAGAGGCCAAAGCGTTTCCTCTCCGCGAACCCTAC
C
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Coding sequence (CDS) from alignment at H-elongata_contig124510:991..1491+

>mRNA_H-elongata_contig124510.1842.1 ID=mRNA_H-elongata_contig124510.1842.1|Name=mRNA_H-elongata_contig124510.1842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig124510:991..1491+ (Himanthalia elongata Himel1 dioecious)
ATGAGTAGCTCTCCGCAGGGCACAATGGTCTTCCCCTTCCGCTCGGGAAC
AGCGCGCTTCACGCTCTTGCCGTTGGGGAGAAGGGGCTCGAAGCAGTCTA
TGTGCGCGAGGACTGGGGACACCTCTCTTGCGATGTGCTTGCGTGACGCG
ATCGCGCCAACGATTAAATGTCTGAACTTCACCTTGACGGCGGCCTTGCC
CTTGTCTTTCATGGCCTTGTTGACGGCGAGATTAGGCATGGAGAGAGGCG
ATGGCGAAGCGGCGGAATCTCCTCGAGCAGCGGAGTCACAGGTTGATGAT
CCGCCGATACAAGAACCTTTGCCAGATTTTTTTTTGAGTATGTTGTTGTG
GTGCCAGTGGCGAAAGGAGATATTTAGATAGATGAGTAGCTCTCCGCAGG
GCACAATGGTCTTCCCCTTCCGCTCGGGAACAGCGCGCTTCACGCTCTTG
CCGTTGGGGAGAAGGGGCTCGAAGCAGTCTATGTGCGCGAGGACTGGGGA
CACCTCTCTTGCGATGTGCTTGCGTGACGCGATCGCGCCAACGATTAAAT
GTCTGAACTTCACCTTGACGGCGGCCTTGCCCTTGTCTTTCATGGCCTTG
TTGACGGCGAGATTAGGCATGGAGAGAGGCGATGGCGAAGCGGCGGAATC
TCCTCGAGCAGCGGAGTCACAGGTTGATGATCCGCCGATACAAGAACCTT
TGCCAGATTTTTTTTTGAGTATGTTGTTGTGGTGCCAGTGGCGAAAGGAG
ATATTTAGATAG
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