mRNA_H-elongata_contig124494.1838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124494.1838.1
Unique NamemRNA_H-elongata_contig124494.1838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: D8LT25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT25_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 6.080e-51
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINWANRPRSYLARTE+WDEYPNGRWGDGRSPAFGELSDTHFFR LVGS+EDRKAMWGEAPI P ++FETFA+YIEG+IPKL
Sbjct:   49 VRPINWANRPRSYLARTEVWDEYPNGRWGDGRSPAFGELSDTHFFRPLVGSREDRKAMWGEAPIVPGEIFETFASYIEGKIPKL 132
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A6H5KKX8_9PHAE (Methylenetetrahydrofolate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.030e-48
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINWANRPRSYLARTE+WDEYPNGRWGDGRSPAFGELSDTHFFR LVG++EDRKAMWGEAPI P ++FETFA+YIEG+IPKL
Sbjct:  334 VRPINWANRPRSYLARTEVWDEYPNGRWGDGRSPAFGELSDTHFFRPLVGTREDRKAMWGEAPIVPGEIFETFASYIEGKIPKL 417
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A835YII2_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.170e-41
Identity = 60/84 (71.43%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPI+WANRP SY+ARTE+WDE+PNGRWGDGRSPAFG+LSD+HF+RF  GS+EDR+ +WGEAPI   +++E FAAY+EG+IP L
Sbjct:  318 VRPIHWANRPHSYIARTEVWDEFPNGRWGDGRSPAFGQLSDSHFYRFAAGSREDRRGLWGEAPIEESEIYEVFAAYVEGKIPAL 401
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A7S4DAI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAI7_HETAK)

HSP 1 Score: 136 bits (343), Expect = 1.030e-37
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINWANRP+SY+ RT  WDE+PNGRWGD  SPAFGEL+DTHF  F V S EDRKAMWGEAP  P +V+E FA Y+EGR+P L
Sbjct:   24 VRPINWANRPKSYVQRTLGWDEFPNGRWGDLTSPAFGELTDTHFADFPVSSVEDRKAMWGEAPQGPAEVYEVFARYVEGRVPYL 107
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: W7TSL1_9STRA (Methylenetetrahydrofolate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSL1_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.450e-35
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINWANRP+SYL+RTE WDE+PNGRWGDGRSPAFGELSD  F    +GS+EDR+AMWGEAP+   +VFE F  Y+   IP L
Sbjct:  340 VRPINWANRPKSYLSRTEEWDEFPNGRWGDGRSPAFGELSDYQFVDTSLGSREDRRAMWGEAPLKDVEVFEAFIKYVRAEIPLL 423
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A7S2UM56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM56_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.760e-35
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSD-THFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            +RPINWANRP+SY+ RTE WDE+PNGRWGD  SPAFGELSD +HF+ F +GS++DR+AM GE P    DV+E FA Y+EG +P L
Sbjct:   61 IRPINWANRPKSYVMRTEDWDEFPNGRWGDATSPAFGELSDLSHFYSFTLGSEDDRRAMLGETPTQFSDVYEVFARYVEGDVPHL 145
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A1Z5K436_FISSO (Methylenetetrahydrofolate reductase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K436_FISSO)

HSP 1 Score: 130 bits (328), Expect = 1.130e-33
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSD-THFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINWANRP+SY+ RTE WDE+PNGRWGD  SPAFGELS  +HFF F +GS+ D++   GE P SP DVFE FA Y+EGRIP +
Sbjct:  362 VRPINWANRPKSYMIRTEDWDEFPNGRWGDSTSPAFGELSSVSHFFSFSLGSEHDQRVTLGENPTSPRDVFEVFAQYVEGRIPSI 446
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A7S2L9K8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L9K8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.160e-33
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSD-THFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL 252
            VRPINW+NRP+SY+ RT+ WDE+PNGRWGD  SPAFGELSD +HF+ F +G  +DR+AM G  P++  DV+E FA Y+EG +P +
Sbjct:   26 VRPINWSNRPKSYVMRTDDWDEFPNGRWGDSTSPAFGELSDLSHFYSFTLGCDDDRRAMLGHCPLNESDVYEVFARYVEGTVPHI 110
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BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A482SR19_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR19_9ARCH)

HSP 1 Score: 119 bits (298), Expect = 4.980e-33
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAY 228
            VRPINWANRP+SY+ RT  WD+YPNGRWGD RSPA+GELSD+HFFR + G KED  AMWG   +S EDV+E    Y
Sbjct:   42 VRPINWANRPKSYIKRTVNWDDYPNGRWGDNRSPAYGELSDSHFFRPVEGKKEDLIAMWGSVLVSEEDVYEVGYVY 117
[Close]
BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Match: A0A7S1C7M9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7M9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.390e-32
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVGSKEDRKAMWGEAPISPEDVFETFAAYIEG 237
            VRPI WANRPRSYL+RT  WDEYPNGRWGD RSPA+GE+S++HF+   VGS  +R+  WGEAP++ +DV+  F  YI+G
Sbjct:  268 VRPIYWANRPRSYLSRTATWDEYPNGRWGDARSPAYGEISESHFYAVAVGSVAERRVAWGEAPLTHDDVYSVFVRYIKG 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124494.1838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT25_ECTSI6.080e-5189.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKX8_9PHAE3.030e-4888.10Methylenetetrahydrofolate reductase n=1 Tax=Ectoca... [more]
A0A835YII2_9STRA2.170e-4171.43Methylenetetrahydrofolate reductase n=1 Tax=Tribon... [more]
A0A7S4DAI7_HETAK1.030e-3771.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TSL1_9STRA4.450e-3569.05Methylenetetrahydrofolate reductase n=2 Tax=Monodo... [more]
A0A7S2UM56_9STRA9.760e-3564.71Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1Z5K436_FISSO1.130e-3367.06Methylenetetrahydrofolate reductase n=1 Tax=Fistul... [more]
A0A7S2L9K8_9STRA4.160e-3360.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A482SR19_9ARCH4.980e-3367.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1C7M9_9STRA1.390e-3263.29Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124494contigH-elongata_contig124494:841..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.2e-41
Seed eggNOG ortholog2880.D8LT25
Preferred nameMTHFR1
KEGG rclassRC00081
KEGG koko:K00297,ko:K10901
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko03440,ko03460,map00670,map00720,map01100,map01120,map01200,map01523,map03440,map03460
KEGG ModuleM00295,M00377,M00414
GOsGO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
EggNOG free text desc.methylenetetrahydrofolate reductase (NAD(P)H) activity
EggNOG OGsCOG0685@1,KOG0564@2759
EC1.5.1.20,3.6.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmethylenetetrahydrofolate reductase
Ec32 orthologEc-08_003880.1
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.7165577-CDS-H-elongata_contig124494:840..9351622929733.7165577-CDS-H-elongata_contig124494:840..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124494 841..935 +
1691679137.0998006-CDS-H-elongata_contig124494:840..9351691679137.0998006-CDS-H-elongata_contig124494:840..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124494 841..935 +
1622929733.7345262-CDS-H-elongata_contig124494:1682..18391622929733.7345262-CDS-H-elongata_contig124494:1682..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124494 1683..1839 +
1691679137.1137435-CDS-H-elongata_contig124494:1682..18391691679137.1137435-CDS-H-elongata_contig124494:1682..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124494 1683..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124494.1838.1prot_H-elongata_contig124494.1838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124494 841..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124494.1838.1

>prot_H-elongata_contig124494.1838.1 ID=prot_H-elongata_contig124494.1838.1|Name=mRNA_H-elongata_contig124494.1838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VRPINWANRPRSYLARTEIWDEYPNGRWGDGRSPAFGELSDTHFFRFLVG
SKEDRKAMWGEAPISPEDVFETFAAYIEGRIPKL
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mRNA from alignment at H-elongata_contig124494:841..1839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124494.1838.1 ID=mRNA_H-elongata_contig124494.1838.1|Name=mRNA_H-elongata_contig124494.1838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig124494:841..1839+ (Himanthalia elongata Himel1 dioecious)
GTCAGGCCTATCAACTGGGCGAATCGTCCACGAAGCTACCTGGCCCGAAC
GGAGATCTGGGACGAGTACCCTAACGGTAGATGGGGTGATGGGCGGTGAG
CCTCGAGTATGTGCGGTTCACGCTCTTTACGATCTCTTGGCTTCTGGTAT
AACTATTAATACTAATACTATTACAAAAAATAATACTAATATTAATATTA
ATACTAATATTAATACTAATACTAATATTAATACTGCTACAGTATAATAT
TGACTCTCTTTGCCCGTGGGTTTGATAGACTTTCTACAAGAGATAGTGTG
CAGTAGTTTAAAGCAGTGTAAAGCAGCAATAATGTAATAATAATGTATAC
TGGTACTGTACGGTTTCTTGGTCGCAGTCGCAGGATTTTTGATTGGCTGA
ATTATCACATCATATGATATCAAAGTCCAGCCCATGGTCATAAGATAGAA
AAATACTTAACTCGGAAATCATCGCCAAAAAAGAAAAAGAAAAGAAGCGA
AAAAAAAAAAAAGAGGAAAAATCGCGCCCCCATCTCCTCGTCATCCCACG
CAACCATCCCAACCCCTGTCATATCATCCCATTCCGTTCTATTCCATCTC
ATCCCGTAGTCTTTTCCGTCGTCACTTATCCACAGACACCGACCGGCTGT
TAAGCGTACAGTATATGGCCTTTTTGTGCGGGGTCTATATATACATTTTT
TTGGTATGTACGTTAGAGCTATGTTTTTCGGGGGCGGGCGGGCGGGTTCG
AATTATTTTATTAGTTAATTTTTACTTGATTTTTATTTCGTTTTTTTCGT
TTCTGTTTTCCGGGGGGCGGGGGGCGGGGGGGATCCAAATAGGAGCCCCG
CTTTCGGAGAGCTAAGCGACACTCACTTCTTTCGCTTCTTGGTGGGGAGT
AAAGAGGACCGCAAGGCCATGTGGGGCGAGGCGCCGATCTCCCCCGAGGA
TGTCTTCGAGACATTTGCGGCCTACATCGAGGGGAGGATCCCCAAGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig124494:841..1839+

>mRNA_H-elongata_contig124494.1838.1 ID=mRNA_H-elongata_contig124494.1838.1|Name=mRNA_H-elongata_contig124494.1838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig124494:841..1839+ (Himanthalia elongata Himel1 dioecious)
GTCAGGCCTATCAACTGGGCGAATCGTCCACGAAGCTACCTGGCCCGAAC
GGAGATCTGGGACGAGTACCCTAACGGTAGATGGGGTGATGGGCGGTCAG
GCCTATCAACTGGGCGAATCGTCCACGAAGCTACCTGGCCCGAACGGAGA
TCTGGGACGAGTACCCTAACGGTAGATGGGGTGATGGGCGGAGCCCCGCT
TTCGGAGAGCTAAGCGACACTCACTTCTTTCGCTTCTTGGTGGGGAGTAA
AGAGGACCGCAAGGCCATGTGGGGCGAGGCGCCGATCTCCCCCGAGGATG
TCTTCGAGACATTTGCGGCCTACATCGAGGGGAGGATCCCCAAGCTGGAG
CCCCGCTTTCGGAGAGCTAAGCGACACTCACTTCTTTCGCTTCTTGGTGG
GGAGTAAAGAGGACCGCAAGGCCATGTGGGGCGAGGCGCCGATCTCCCCC
GAGGATGTCTTCGAGACATTTGCGGCCTACATCGAGGGGAGGATCCCCAA
GCTG
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