mRNA_H-elongata_contig124475.1837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124475.1837.1
Unique NamemRNA_H-elongata_contig124475.1837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2AR06_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AR06_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.390e-50
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
            SG ++ C+NGGIC+ KDDC C+   SVLW+ Y ++ R +TGWTGTDCS+P+C+QGFFDPFCTDL QAPGGE           GC+RC+NGG C+APD C CAEGW GYDC+TP+CE+
Sbjct:  223 SGAITGCENGGICTWKDDCFCIQTLSVLWRAYPESPRGITGWTGTDCSLPMCIQGFFDPFCTDLDQAPGGE-----------GCYRCANGGYCTAPDTCTCAEGWTGYDCKTPVCEM 328          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: D8LSI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI8_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.890e-49
Identity = 83/151 (54.97%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   19 CQNGGICSAKDDCTC----------------------------------------VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
            C NGG C A D C+C                                        VTADS+LWQVYE+ANRD+TGWTGTDCSMP+C QGFFDPFCTDLPQAPGGE           GCFRC NGGVC+APDHC CA+GW GYDCRTP+CEV
Sbjct: 1845 CHNGGSCLAPDTCSCPDGWDGYDCNTPLCRHLQPSGXXXXXXXXXXXXXXXXXXXVTADSILWQVYEEANRDITGWTGTDCSMPMCAQGFFDPFCTDLPQAPGGE-----------GCFRCPNGGVCTAPDHCSCADGWTGYDCRTPVCEV 1984          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S3UTA0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA0_HETAK)

HSP 1 Score: 173 bits (439), Expect = 3.030e-48
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    4 GLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLERSD 378
            G V+SCQNGG C AKD+C CV  +S+LW+V+EDA R  TGW GTDCS P+C QG++DPFC DLP+AP GE           GC+RC+NGG C+APD C CAEGW GYDCR P+CEV   +L R +
Sbjct:  389 GAVTSCQNGGQCVAKDNCQCVLTESLLWEVHEDAPRGWTGWAGTDCSTPVCAQGYYDPFCHDLPEAPAGE-----------GCYRCANGGNCTAPDLCTCAEGWTGYDCREPVCEVVADILTREN 502          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7R9U1K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1K2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.780e-45
Identity = 70/116 (60.34%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 GLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
            G V  C NG IC+ +DDC C T DS+L+  Y +A R  TGW GTDCSMPICVQG++DPFCTDL QAP GE           GCFRC+N G C+APD C CA GW GYDCRTP+CE 
Sbjct:  120 GSVHGCING-ICANRDDCACTTTDSLLYLEYPEAERGDTGWAGTDCSMPICVQGYYDPFCTDLAQAPSGE-----------GCFRCANDGYCTAPDVCSCAPGWTGYDCRTPVCEA 223          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A8J2X4X9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4X9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.060e-42
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   10 VSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTD----LPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
            V++C+NGG+C  KD C CVTA SVL + + +A    TGW GTDC+MPICVQG+FDPFC+     +PQAPGGE           GC+RC NGG C+APD C C EGW GYDCRTP+CE     LER
Sbjct: 2525 VAACENGGVCKEKDTCECVTALSVLHEKFPNAPGGATGWQGTDCTMPICVQGYFDPFCSGPIKGIPQAPGGE-----------GCYRCPNGGYCTAPDTCTCTEGWTGYDCRTPVCERVATPLER 2638          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2FA90_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA90_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.910e-40
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   64 VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICE 348
            +T+ S LW+VYEDANR  TGW GTDCSMPIC QGF+DPFCTDL +APGGE           GC+RCSNGG C+APD C CA+GW GYDCRTPICE
Sbjct:  711 ITSPSKLWEVYEDANRGTTGWMGTDCSMPICTQGFYDPFCTDLAEAPGGE-----------GCYRCSNGGNCTAPDTCTCADGWGGYDCRTPICE 794          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S3JQX4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQX4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.280e-39
Identity = 73/159 (45.91%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   19 CQNGGICSAKDDCTC-----------------------------------------VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
            C NGG C A D CTC                                         +   S+L + Y+DA   +TGWTGTDC+MP+CVQGF+DPFCTDLPQAPGGE           GC+RC+NGG C+APD C CAEGW GYDCRTP+CEV    L+R
Sbjct: 1626 CNNGGTCIAPDVCTCKDGWDGFDCSTPLCRHLQTATGVVSGXXXXXXXXXXXXXXXIQVPSILKETYDDAPGGVTGWTGTDCTMPMCVQGFYDPFCTDLPQAPGGE-----------GCYRCANGGNCTAPDTCTCAEGWTGYDCRTPVCEVVATPLQR 1773          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A835Z190_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z190_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.500e-37
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   70 ADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
            A+SVLW+VY DA R  TGW GTDCSMP+CVQG FDPFC  LPQAPGGE           GCFRC+NGG C+APD C CA GW GYDCRTP+CE     L R
Sbjct: 1870 AESVLWKVYPDAVRGRTGWGGTDCSMPMCVQGHFDPFCGGLPQAPGGE-----------GCFRCANGGNCTAPDVCACAPGWAGYDCRTPVCEAVADALTR 1959          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2SSM4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSM4_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.670e-37
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
            SG ++ C  G           VT +S+LW  ++ A R  TG+ G+DCSMP+C QGF+DPFCTDLP+APGGE           GC+RC+NGG C+APD C C  GW GYDCRTP+CE 
Sbjct:   86 SGAITGCLYGXXXXXXXXXXXVTTESILWTKHQGAPRGTTGFAGSDCSMPMCTQGFYDPFCTDLPEAPGGE-----------GCYRCANGGNCTAPDTCTCPSGWTGYDCRTPVCEA 191          
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A482T1I0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1I0_9ARCH)

HSP 1 Score: 141 bits (356), Expect = 2.190e-36
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   64 VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
            V   SVL++V+E+  +  TGWTG+DCSMPICV G++DPFCTDLPQAPGGE           GC+RC+NGG C+APD C CA GW GYDCRTP+CEV
Sbjct: 1743 VQTPSVLYKVHENTLKGKTGWTGSDCSMPICVHGYYDPFCTDLPQAPGGE-----------GCYRCANGGNCTAPDVCTCAPGWTGYDCRTPVCEV 1827          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2AR06_9STRA1.390e-5061.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LSI8_ECTSI1.890e-4954.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UTA0_HETAK3.030e-4859.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U1K2_9STRA1.780e-4560.34Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J2X4X9_9STRA9.060e-4256.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FA90_9STRA1.910e-4068.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JQX4_9STRA1.280e-3945.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835Z190_9STRA2.500e-3764.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SSM4_9STRA2.670e-3751.28Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A482T1I0_9ARCH2.190e-3662.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124475contigH-elongata_contig124475:110..981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue3.6e-43
Seed eggNOG ortholog2880.D8LSI8
Preferred nameFBN3
KEGG koko:K02599,ko:K17495
KEGG Pathwayko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG ModuleM00682
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759,KOG2177@1,KOG2177@2759,KOG4297@1,KOG4297@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009
Hectar predicted targeting categoryother localisation
Exons4
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124475.1837.1prot_H-elongata_contig124475.1837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124475 110..981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.4161797-CDS-H-elongata_contig124475:109..2681622929733.4161797-CDS-H-elongata_contig124475:109..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 110..268 -
1691679137.0499077-CDS-H-elongata_contig124475:109..2681691679137.0499077-CDS-H-elongata_contig124475:109..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 110..268 -
1622929733.4300592-CDS-H-elongata_contig124475:391..4021622929733.4300592-CDS-H-elongata_contig124475:391..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 392..402 -
1691679137.064958-CDS-H-elongata_contig124475:391..4021691679137.064958-CDS-H-elongata_contig124475:391..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 392..402 -
1622929733.4414291-CDS-H-elongata_contig124475:587..7321622929733.4414291-CDS-H-elongata_contig124475:587..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 588..732 -
1691679137.0758224-CDS-H-elongata_contig124475:587..7321691679137.0758224-CDS-H-elongata_contig124475:587..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 588..732 -
1622929733.4609506-CDS-H-elongata_contig124475:891..9811622929733.4609506-CDS-H-elongata_contig124475:891..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 892..981 -
1691679137.0865705-CDS-H-elongata_contig124475:891..9811691679137.0865705-CDS-H-elongata_contig124475:891..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124475 892..981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124475.1837.1

>prot_H-elongata_contig124475.1837.1 ID=prot_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMP
ICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCD
CAEGWKGYDCRTPICEVGWCVLERSDHFVRSTLFS
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mRNA from alignment at H-elongata_contig124475:110..981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124475.1837.1 ID=mRNA_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=872bp|location=Sequence derived from alignment at H-elongata_contig124475:110..981- (Himanthalia elongata Himel1 dioecious)
TCTGGGCTCGTGTCCAGCTGTCAGAATGGGGGAATCTGTTCAGCGAAGGA CGACTGCACATGCGTCACGGCCGACAGCGTCTTGTGGCAGGTAACGTGGG TGTGGTCGGTGCGCCCAATGAGCAGCGCATAAACAGTAAAGCTCATCCTG CCGTAAGATGCCGCCTACCGGGTATTACGAACAACGTGACTGCGCTTCTT CTCTGCCTGAGCAATATTGACGAAGATCTACTATATCGTGCACCTTCAGG TATACGAAGACGCTAACCGAGATTTAACCGGGTGGACTGGGACGGACTGC TCAATGCCAATTTGTGTTCAGGGATTCTTTGACCCTTTCTGCACGGACCT GCCACAAGCGCCTGGGGGCGAGGTGAACCTGAGCTCTGCTCTCCGTTATC GAGCCTAAAATTACGTAGACGCTTCCTTTCTCGCGAGCCCCTTGCGAGGG AAACGTCCCTTATCTACTTTGAAGTATTTCCCTTACTTCCTACTTCCTAG AACTCTTCGTACACCTTCCGTGGCCGGATGTGAAGAACCAATTCATACTT GTTTCCGTATCTAAACGGTACTCTGTCAGGGCGTGGTGATGTACAACTAT TATGTTGGGCGGCGCCCGTCAACACACAATTCCACAAACACGTTAGACTT CGCGCTTCGAAACCCTGTGCGACTCTTTTCTCCCTTCTCTCATCCTAATA TCACCGTTGTTAGGGTTGTTTTAGATGTTCAAATGGCGGCGTCTGCTCTG CGCCCGACCATTGCGATTGTGCCGAGGGGTGGAAAGGGTATGACTGCAGG ACGCCCATTTGCGAGGTGGGTTGGTGTGTCTTGGAACGTTCTGATCACTT TGTACGATCGACATTATTTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig124475:110..981-

>mRNA_H-elongata_contig124475.1837.1 ID=mRNA_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig124475:110..981- (Himanthalia elongata Himel1 dioecious)
TCTGGGCTCGTGTCCAGCTGTCAGAATGGGGGAATCTGTTCAGCGAAGGA
CGACTGCACATGCGTCACGGCCGACAGCGTCTTGTGGCAGTCTGGGCTCG
TGTCCAGCTGTCAGAATGGGGGAATCTGTTCAGCGAAGGACGACTGCACA
TGCGTCACGGCCGACAGCGTCTTGTGGCAGGTATACGAAGACGCTAACCG
AGATTTAACCGGGTGGACTGGGACGGACTGCTCAATGCCAATTTGTGTTC
AGGGATTCTTTGACCCTTTCTGCACGGACCTGCCACAAGCGCCTGGGGGC
GAGGTGAACCTGAGCTCTGCTCTCCGTATACGAAGACGCTAACCGAGATT
TAACCGGGTGGACTGGGACGGACTGCTCAATGCCAATTTGTGTTCAGGGA
TTCTTTGACCCTTTCTGCACGGACCTGCCACAAGCGCCTGGGGGCGAGGT
GAACCTGAGCTCTGCTCTCCGGCGTGGTGATGGCGTGGTGATGGTTGTTT
TAGATGTTCAAATGGCGGCGTCTGCTCTGCGCCCGACCATTGCGATTGTG
CCGAGGGGTGGAAAGGGTATGACTGCAGGACGCCCATTTGCGAGGTGGGT
TGGTGTGTCTTGGAACGTTCTGATCACTTTGTACGATCGACATTATTTTC
CGGTTGTTTTAGATGTTCAAATGGCGGCGTCTGCTCTGCGCCCGACCATT
GCGATTGTGCCGAGGGGTGGAAAGGGTATGACTGCAGGACGCCCATTTGC
GAGGTGGGTTGGTGTGTCTTGGAACGTTCTGATCACTTTGTACGATCGAC
ATTATTTTCC
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