prot_H-elongata_contig124471.1836.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig124471.1836.1
Unique Nameprot_H-elongata_contig124471.1836.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length130
Homology
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 3.060e-78
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVPKSIALNLTVPELVTAFNVEEMA+LVA GP+EHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct:  404 VGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 533          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 3.210e-78
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVPKSIALNLTVPELVTAFNVEEMA+LVA GP+EHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct:  400 VGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 529          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 217 bits (553), Expect = 5.230e-63
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+SIALNLTVPE+VT FN E +  L+  GP EHPGA++I+R DGVRVDLR+VRNK  L L  G+ VERHL DDD IIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct:  395 VGVPRSIALNLTVPEMVTTFNQERLLALINKGPYEHPGAKFIIRQDGVRVDLRYVRNKADLALVPGWTVERHLADDDYIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 524          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A396ZZC1_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A396ZZC1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.280e-62
Identity = 95/130 (73.08%), Postives = 116/130 (89.23%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+SIA+NLTVPE VT FN+  M +L++ GP+EHPGA+YI+R DG R+DLR++++K+ L L+ G+ VERHLRDDD ++FNRQPSLHKMSIM HRVKVLDWSTFR+N+SVTTPYNADFDGDEMNLHVPQ
Sbjct:  401 VGVPRSIAMNLTVPERVTPFNMVLMHQLISRGPLEHPGAKYIIREDGNRIDLRYIKSKSELALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKVLDWSTFRLNISVTTPYNADFDGDEMNLHVPQ 530          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A7S0T970_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T970_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.470e-62
Identity = 97/130 (74.62%), Postives = 117/130 (90.00%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+S+A+NLTVPE VTAFN+ E+++LVA GP  HPGA++I+R DG R+DLR+V+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKVLDWSTFR+NLS T+PYNADFDGDEMNLHVPQ
Sbjct:  361 VGVPRSVAMNLTVPERVTAFNIHELSQLVANGPTTHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQ 490          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 214 bits (545), Expect = 6.260e-62
Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+SIA+NLTVPE VT FN+  M +L+A GP+EHPGA+YI+R DG R+DLR+++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV DWSTFR+NLSVT+PYNADFDGDEMNLHVPQ
Sbjct:  401 VGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQ 530          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 214 bits (545), Expect = 6.270e-62
Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+SIA+NLTVPE VT FN+  M +L+A GP+EHPGA+YI+R DG R+DLR+++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV DWSTFR+NLSVT+PYNADFDGDEMNLHVPQ
Sbjct:  401 VGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQ 530          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A7S3MJY2_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJY2_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.500e-61
Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+S+AL LTVP  VT FN+ E+ +LVA GP+E PGA YI+R D  R+DLR+VR+KN + L+YG+ VERHLRDDDI++FNRQPSLHKMSIMGHR K+LDWSTFR+NLSVTTPYNADFDGDEMNLHVPQ
Sbjct:  432 VGVPRSVALILTVPVTVTPFNIHELRQLVANGPLEWPGAMYIIRGDQSRIDLRYVRSKNDIVLEYGWTVERHLRDDDIVLFNRQPSLHKMSIMGHRAKILDWSTFRLNLSVTTPYNADFDGDEMNLHVPQ 561          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A1E7FK73_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK73_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.580e-61
Identity = 95/130 (73.08%), Postives = 118/130 (90.77%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VGVP+S+A+NLTVP+ VTAFN++E+++LV+ GP  HPGA++I+R DG R+DLR+V+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKVLDWSTFR+NLS T+PYNADFDGDEMNLHVPQ
Sbjct:  363 VGVPRSVAMNLTVPDRVTAFNMQELSQLVSNGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWVVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQ 492          
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A6G3MHI6_HENSL (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MHI6_HENSL)

HSP 1 Score: 199 bits (506), Expect = 2.010e-61
Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 0
Query:    1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 130
            VG P+SIA+NL++PE+VT FN+  + +LV  GP ++PGA+YI+R  G R+DLRF    + L LQYGY VERHLRD DII+FNRQP+LHKMS+MGHR++VL WSTFR+NLSVTTPYNADFDGDEMN+H+PQ
Sbjct:   85 VGTPRSIAMNLSIPEIVTPFNISALQELVHNGPTQYPGAKYIIRDTGERIDLRFHPRTSDLHLQYGYVVERHLRDGDIIVFNRQPTLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNMHIPQ 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE3.060e-7896.92DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI3.210e-7896.92DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA5.230e-6379.23DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A396ZZC1_9STRA2.280e-6273.08DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]
A0A7S0T970_9STRA2.470e-6274.62DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
H3GA78_PHYRM6.260e-6273.85DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A0W8DAF9_PHYNI6.270e-6273.85DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
A0A7S3MJY2_9STRA1.500e-6174.62DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A1E7FK73_9STRA1.580e-6173.08DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A6G3MHI6_HENSL2.010e-6167.69DNA-directed RNA polymerase subunit (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..130
e-value: 9.9E-14
score: 44.7
NoneNo IPR availableGENE3D2.40.40.20coord: 1..130
e-value: 2.2E-54
score: 185.7
NoneNo IPR availableGENE3D3.30.1490.180coord: 11..73
e-value: 2.2E-54
score: 185.7
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..130
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..130
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..130
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 1..130
e-value: 4.4E-55
score: 186.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124471contigH-elongata_contig124471:460..1686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124471.1836.1mRNA_H-elongata_contig124471.1836.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig124471 460..1686 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig124471.1836.1 ID=prot_H-elongata_contig124471.1836.1|Name=mRNA_H-elongata_contig124471.1836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRV
DLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVL
DWSTFRMNLSVTTPYNADFDGDEMNLHVPQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR000722RNA_pol_asu