mRNA_H-elongata_contig124468.1835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124468.1835.1
Unique NamemRNA_H-elongata_contig124468.1835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.660e-34
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    7 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 255
            +RVTNPHEA+IG RVFLG+SGQPL DM RY T +   D D    KPACLRRLE+ L WRHMAPTAPETLGCYPF+TEDPF++E
Sbjct:  335 KRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKD---AKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVE 414
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7S2XVE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVE7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.190e-22
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 255
            VTNP+EA +GGR+FLG SGQP+ D+ R+  L +  DG   S++   L  +E+TL W H+APTAP+TL CYPF  EDPFI++
Sbjct:   49 VTNPYEAEVGGRLFLGHSGQPVLDISRFTHLGQ-DDGKSASQR--TLDIMEETLKWAHLAPTAPDTLACYPFFQEDPFILK 126
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A835YHI6_9STRA (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.190e-21
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 255
             TNPHEA +G R+ LGT+GQPL D+ +Y        GD + +    L+ LE  L W+H+APTAP+TLGCYPF+TEDPF++E
Sbjct:  395 ATNPHEAWVGTRLVLGTAGQPLDDILQYTAAAEGAGGD-EGDSARRLQMLENMLRWQHIAPTAPDTLGCYPFLTEDPFVLE 474
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9ITJ9_9NEOP (Hypothetical protein (Fragment) n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9ITJ9_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 1.740e-21
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 252
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:   44 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 111
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9PML2_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9PML2_TIMGE)

HSP 1 Score: 90.5 bits (223), Expect = 2.710e-21
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 252
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:   10 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 77
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7J5YNE7_DISMA (DNA polymerase delta subunit 2 n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5YNE7_DISMA)

HSP 1 Score: 90.9 bits (224), Expect = 1.880e-19
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    7 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 255
            Q VTNPH++ I G  FLGTSGQ + D++RY+++D     DH       L  LE+TL  RH+APTAP+TLGCYPF  +DPFI+E
Sbjct:  654 QLVTNPHQSHIDGVRFLGTSGQNVCDIQRYSSMD-----DH-------LEILEETLRLRHLAPTAPDTLGCYPFYQKDPFILE 724
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9EV73_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9EV73_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 252
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:  695 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 762
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A6I9NCE6_9TELE (DNA polymerase delta subunit 2 n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NCE6_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 2.900e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    7 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 255
            Q VTNPH++ I G  FLGTSGQ + D++RY+++D     DH       L  LE TL  RH+APTAP+TLGCYPF  +DPFI+E
Sbjct:  327 QLVTNPHQSHIDGVRFLGTSGQNVCDIQRYSSMD-----DH-------LEILEDTLRLRHLAPTAPDTLGCYPFYQKDPFILE 397
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BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A1S3JJW3_LINUN (DNA polymerase delta subunit 2 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JJW3_LINUN)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 252
            VTNP++  I G  FLGTSGQ +TD+ RY+TLD     DH       L+ +E  LTW H+APTAP+TLGCYP+ + DPFII
Sbjct:  330 VTNPYDCTIEGIRFLGTSGQNVTDIHRYSTLD-----DH-------LQIMENCLTWGHLAPTAPDTLGCYPYYSNDPFII 397
[Close]
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9D1D7_TIMPO (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9D1D7_TIMPO)

HSP 1 Score: 88.2 bits (217), Expect = 1.480e-18
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   13 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 252
            V+NP+   +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TL CYP+  EDPFII
Sbjct:  349 VSNPYHCEVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLSCYPYYKEDPFII 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI6.660e-3472.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVE7_9STRA3.190e-2254.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YHI6_9STRA1.190e-2153.09DNA polymerase alpha/epsilon subunit B-domain-cont... [more]
A0A7R9ITJ9_9NEOP1.740e-2155.00Hypothetical protein (Fragment) n=1 Tax=Timema tah... [more]
A0A7R9PML2_TIMGE2.710e-2155.00Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
A0A7J5YNE7_DISMA1.880e-1954.22DNA polymerase delta subunit 2 n=1 Tax=Dissostichu... [more]
A0A7R9EV73_9NEOP2.570e-1955.00Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A6I9NCE6_9TELE2.900e-1954.22DNA polymerase delta subunit 2 n=4 Tax=Notothenioi... [more]
A0A1S3JJW3_LINUN5.470e-1955.00DNA polymerase delta subunit 2 n=2 Tax=Lingula ung... [more]
A0A7R9D1D7_TIMPO1.480e-1853.75Hypothetical protein n=4 Tax=Timema TaxID=61471 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124468contigH-elongata_contig124468:236..1324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D7FZB3
Preferred namePOLD2
KEGG rclassRC02795
KEGG koko:K02321,ko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00261,M00262
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033567,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0042575,GO:0042592,GO:0042769,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0050896,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903046,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1311@1,KOG2732@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.2906265-CDS-H-elongata_contig124468:235..3691622929733.2906265-CDS-H-elongata_contig124468:235..369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124468 236..369 -
1691679137.0047479-CDS-H-elongata_contig124468:235..3691691679137.0047479-CDS-H-elongata_contig124468:235..369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124468 236..369 -
1622929733.3108792-CDS-H-elongata_contig124468:1203..13241622929733.3108792-CDS-H-elongata_contig124468:1203..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124468 1204..1324 -
1691679137.0177073-CDS-H-elongata_contig124468:1203..13241691679137.0177073-CDS-H-elongata_contig124468:1203..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124468 1204..1324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124468.1835.1prot_H-elongata_contig124468.1835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124468 236..1324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124468.1835.1

>prot_H-elongata_contig124468.1835.1 ID=prot_H-elongata_contig124468.1835.1|Name=mRNA_H-elongata_contig124468.1835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MQQRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPAC
LRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE
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mRNA from alignment at H-elongata_contig124468:236..1324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124468.1835.1 ID=mRNA_H-elongata_contig124468.1835.1|Name=mRNA_H-elongata_contig124468.1835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1089bp|location=Sequence derived from alignment at H-elongata_contig124468:236..1324- (Himanthalia elongata Himel1 dioecious)
ATGCAACAGAGAGTCACGAACCCCCACGAGGCCAGGATCGGGGGGAGGGT
GTTCCTGGGGACCTCGGGGCAGCCGCTGACGGATATGGAGCGTTACGCCA
CGCTTGATCGCGCCCCGGATGGTGAGTCGATGCCCCTTGCCGACGTCACC
ACTGCTGTGAAACGGGTGACGGCCCTTTTGTAGCGCTCCCTCGGGTGGAT
CCGCTGAATTTTCCAGGAATCTTTCTTTGGGCTTTCGTTTGTTTCACCAT
CCCCCCTCCCCCATATTTCTCCCCCCTTCGATCTTGTCCCAAACCGTTAG
TGAGTGGGTAGGCCAGTGCGCCTTAGGGTCTACACGGACGGGTGACCCTC
GTGGCGCTCGCTCACGTGGATCCGCAGAATTTTCTAGGAATCTTATTTTC
AATATTTCTTGATATCAAACTCCATTTGATCTCCTCCGGGACGGTCAGTG
GGTAGATAGGTGCGCGGGTGAGGCAGAATTCTTAAGCAGCATCATCGAAA
ACAGATACCACGTACAAGTATAAGATATATTAGTATGTATATATAGTCCT
AAATCGTCACTTAAAGTTCAGATTCATTTCACTTTTACTTAATTTTAAAT
TTAAGTGAAGTGAAATAAATTTATTCATTTCTTCATTTCTTTTTGTTCTT
TACTCCCTTTCCACTCAAAACTTATACCGACTACAGTATACTGCTGATTT
TTTATTTATGATTTTATAATACTCCCTTATTATTTTTGACTTCTCTAATC
TACCTGCAAGAAAATATTCCACGCTCGCGTCCCGCTCCTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCACCACCCG
CCGCCCCGCCGGCGCCAGGGGGCGNNNNNNNNNNACCCCCCAGAAAATAA
TCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCTTCAACCCCCCGAA
CGAAGGTGACCACGACTCGGAGAAACCCGCGTGCCTGCGGAGGTTGGAAC
AAACCCTGACGTGGAGGCACATGGCACCCACTGCCCCCGAGACCCTCGGC
TGCTATCCGTTCATCACGGAGGATCCTTTCATCATTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig124468:236..1324-

>mRNA_H-elongata_contig124468.1835.1 ID=mRNA_H-elongata_contig124468.1835.1|Name=mRNA_H-elongata_contig124468.1835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig124468:236..1324- (Himanthalia elongata Himel1 dioecious)
ATGCAACAGAGAGTCACGAACCCCCACGAGGCCAGGATCGGGGGGAGGGT
GTTCCTGGGGACCTCGGGGCAGCCGCTGACGGATATGGAGCGTTACGCCA
CGCTTGATCGCGCCCCGGATGATGCAACAGAGAGTCACGAACCCCCACGA
GGCCAGGATCGGGGGGAGGGTGTTCCTGGGGACCTCGGGGCAGCCGCTGA
CGGATATGGAGCGTTACGCCACGCTTGATCGCGCCCCGGATGGTGACCAC
GACTCGGAGAAACCCGCGTGCCTGCGGAGGTTGGAACAAACCCTGACGTG
GAGGCACATGGCACCCACTGCCCCCGAGACCCTCGGCTGCTATCCGTTCA
TCACGGAGGATCCTTTCATCATTGAGGTGACCACGACTCGGAGAAACCCG
CGTGCCTGCGGAGGTTGGAACAAACCCTGACGTGGAGGCACATGGCACCC
ACTGCCCCCGAGACCCTCGGCTGCTATCCGTTCATCACGGAGGATCCTTT
CATCATTGAG
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