mRNA_H-elongata_contig124434.1832.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: D7G6C9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C9_ECTSI) HSP 1 Score: 191 bits (485), Expect = 6.780e-56 Identity = 87/107 (81.31%), Postives = 100/107 (93.46%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFDV 324
+CIAVIAN E LGLP F+TKYNGKPVLINRSG WV+G+NYIENTINVHRFSFIAKKSLH+LK +FKDMVLHLGFT+EGR+ DELPES+LACSTL+YP ++RA+EFDV
Sbjct: 478 KCIAVIANSESLGLPSFITKYNGKPVLINRSGHWVKGENYIENTINVHRFSFIAKKSLHSLKGLFKDMVLHLGFTVEGRAADELPESLLACSTLHYPMMERAVEFDV 584
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A835YTM0_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM0_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.670e-24 Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGD-------NYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIE 315
+ + V+ N+ GL + +NGKPVLI ++G+ G +E INVHRF F AKK+LHTL F+ M+LH+GFTIEGR+PDELPE +LAC+ L YP D A E
Sbjct: 527 KAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEE 637
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2MX10_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 9.820e-23 Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
+ I ++ EK+G+PGF+T+YNGKP LI +SG + R + YIE INVH ++++A+K + TL F +++++GFTIEGRS ELPE +L
Sbjct: 168 KAIGLVEEMEKMGIPGFITQYNGKPTLITKSGNFTRHEKYIEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMELPEVLL 256
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A482RWA7_9ARCH (DUF1336 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWA7_9ARCH) HSP 1 Score: 94.0 bits (232), Expect = 1.990e-22 Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVR--GDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRA 309
+Q I + N+E+LG P +T+YNGKPVLI R+G + + Y+E I+VH+F+ +AK+S++ L + M +++GF IEGR ELPE++ AC ++ P+ ++A
Sbjct: 24 LQVICLCTNFEELGFPSMITQYNGKPVLIRRTGTIFKDPANRYLEMNIHVHKFATMAKQSIYMLTSRANSMNMNIGFVIEGREDKELPETLFACCSVSRPQEEQA 128
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: K0RLE4_THAOC (EDR2_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RLE4_THAOC) HSP 1 Score: 94.0 bits (232), Expect = 4.800e-22 Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVR-GDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFD 321
+C+ +I + E G+P F+ YNGKP L+ +SG + R G YIE TINV R+ ++A+K L L F + VL++GFTIEGR DELPE++L + DRA D
Sbjct: 62 KCMGMIEDVESSGVPQFIAGYNGKPALVTKSGTFTRHGGRYIEFTINVDRWGYLARKGLCALTPSFPNFVLNIGFTIEGRGDDELPEALLGGVRVANLDPDRAYVLD 168
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2U9P4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9P4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.890e-21 Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLA 273
+C+ V+ + EK +P F+ YNGKP L+ +SGK+ R NY E +N+H +SF KK L L+ F D +L+ GFTIE R +ELPE +LA
Sbjct: 101 KCMGVVEDIEKTKIPSFIQGYNGKPALVQKSGKYRRYGNYAEAWVNIHGWSFACKKGLAALRPKFPDFILNTGFTIEARDDEELPEVLLA 190
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A6T8K6G2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8K6G2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.600e-20 Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
++ + +I + E LPGF++++NGKPVLI +S + R NYIE +N+H+++++ KK L +L+ F + ++GFTIEGR DELPE +L
Sbjct: 128 MKAMCLIDDVENSSLPGFISRFNGKPVLITKSSTFTRFPNYIELQVNIHKWAYMPKKGLFSLQPKFPSLAFNVGFTIEGREDDELPEVLL 217
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 5.250e-20 Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
+C+ I + E +P F+ YNGKP L+ +SG + R +NYIE TINV+ ++F+A+K LH+L F+D + ++GFTIE R +E+PE +L
Sbjct: 491 KCMGQIEDIESTSIPKFIHGYNGKPALVTKSGTFTRHENYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEMPEVLL 579
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: F2UGX6_SALR5 (EDR2_C domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UGX6_SALR5) HSP 1 Score: 87.4 bits (215), Expect = 6.990e-20 Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 25 NYEKLGLPGFVTKYNGKPVLINRSGKWVRG-DN-YIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTL 285
N+ +LGLP + YNGKP LI +G RG DN ++E INVH F + +KS+H+L+ K MV+HLG TIEG + DELPE + C L
Sbjct: 6 NFRELGLPTLLEGYNGKPALIKATGTVCRGKDNAFLEMCINVHSFPVLTRKSIHSLRGKMKQMVVHLGTTIEGHADDELPERIAFCCRL 94
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.170e-19 Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDN--------YIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFD 321
++ IA AN + L LP F++ YNGKPVLI +SG+ +G + YIE I VHRF+++A+K L+ F M+L + F +EGR DELPE +L + L + A+E D
Sbjct: 282 LKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLLYIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDELPEQILGAARLNNVDYEAAVEGD 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124434.1832.1 >prot_H-elongata_contig124434.1832.1 ID=prot_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRback to top mRNA from alignment at H-elongata_contig124434:467..1339+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124434.1832.1 ID=mRNA_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig124434:467..1339+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124434:467..1339+ >mRNA_H-elongata_contig124434.1832.1 ID=mRNA_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig124434:467..1339+ (Himanthalia elongata Himel1 dioecious)back to top |