mRNA_H-elongata_contig124319.1824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124319.1824.1
Unique NamemRNA_H-elongata_contig124319.1824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124319.1824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124319contigH-elongata_contig124319:1283..1881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124319.1824.1prot_H-elongata_contig124319.1824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124319 1286..1699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.0640442-UTR-H-elongata_contig124319:1282..12851622929732.0640442-UTR-H-elongata_contig124319:1282..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124319 1283..1285 +
1691679136.580164-UTR-H-elongata_contig124319:1282..12851691679136.580164-UTR-H-elongata_contig124319:1282..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124319 1283..1285 +
1622929732.1220431-UTR-H-elongata_contig124319:1699..18811622929732.1220431-UTR-H-elongata_contig124319:1699..1881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124319 1700..1881 +
1691679136.5983405-UTR-H-elongata_contig124319:1699..18811691679136.5983405-UTR-H-elongata_contig124319:1699..1881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124319 1700..1881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.082073-CDS-H-elongata_contig124319:1285..16991622929732.082073-CDS-H-elongata_contig124319:1285..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124319 1286..1699 +
1691679136.5880945-CDS-H-elongata_contig124319:1285..16991691679136.5880945-CDS-H-elongata_contig124319:1285..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124319 1286..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124319.1824.1

>prot_H-elongata_contig124319.1824.1 ID=prot_H-elongata_contig124319.1824.1|Name=mRNA_H-elongata_contig124319.1824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MPKEMLRLFVVPTHGLRGGVRRRRTATHSVRCGELLHGHDSLLSMFTNDK
PRFPLPSRFYPLTTRVVRVVFACSVSIHHITLTFFGRRKLNVMLLGMEVT
SYLFRRLIARCRQFFVFDLWESTYTAPVLGCTLFSNS*
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mRNA from alignment at H-elongata_contig124319:1283..1881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124319.1824.1 ID=mRNA_H-elongata_contig124319.1824.1|Name=mRNA_H-elongata_contig124319.1824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=599bp|location=Sequence derived from alignment at H-elongata_contig124319:1283..1881+ (Himanthalia elongata Himel1 dioecious)
CGCATGCCAAAAGAGATGCTTCGCCTGTTTGTGGTTCCCACGCATGGCCT
ACGCGGGGGCGTACGTCGTAGGCGTACGGCGACGCATTCGGTGCGGTGCG
GTGAGTTACTTCATGGCCACGATTCCCTCCTCTCGATGTTTACAAACGAC
AAGCCACGATTCCCATTGCCCTCGCGTTTTTATCCCCTGACTACTCGTGT
CGTCAGGGTCGTATTTGCGTGTAGCGTGTCCATTCACCACATCACTCTTA
CCTTTTTTGGCAGAAGAAAACTTAACGTAATGCTTCTCGGGATGGAGGTG
ACCTCTTACCTCTTTCGGCGCCTCATCGCTCGTTGCCGTCAATTTTTCGT
TTTCGATCTTTGGGAGTCGACTTATACTGCCCCGGTTCTTGGATGTACCC
TATTTAGTAACAGTTAATTACTCGACAGCAGGGTGATGTACAGCGTTCAG
TTTCGTACGTACCTTATACCTTATACCTTCGTTATTTTGTGATATTGTGA
TAGACTAAATAGAAGTATCAGGTACAATTTCTAGGATCTAGATTTAATTT
GTGGTTAGGCCGGGTCTTATCAGAACACAAAAATTTAAATTTCCAGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig124319:1283..1881+

>mRNA_H-elongata_contig124319.1824.1 ID=mRNA_H-elongata_contig124319.1824.1|Name=mRNA_H-elongata_contig124319.1824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig124319:1283..1881+ (Himanthalia elongata Himel1 dioecious)
ATGCCAAAAGAGATGCTTCGCCTGTTTGTGGTTCCCACGCATGGCCTACG
CGGGGGCGTACGTCGTAGGCGTACGGCGACGCATTCGGTGCGGTGCGGTG
AGTTACTTCATGGCCACGATTCCCTCCTCTCGATGTTTACAAACGACAAG
CCACGATTCCCATTGCCCTCGCGTTTTTATCCCCTGACTACTCGTGTCGT
CAGGGTCGTATTTGCGTGTAGCGTGTCCATTCACCACATCACTCTTACCT
TTTTTGGCAGAAGAAAACTTAACGTAATGCTTCTCGGGATGGAGGTGACC
TCTTACCTCTTTCGGCGCCTCATCGCTCGTTGCCGTCAATTTTTCGTTTT
CGATCTTTGGGAGTCGACTTATACTGCCCCGGTTCTTGGATGTACCCTAT
TTAGTAACAGTTAAATGCCAAAAGAGATGCTTCGCCTGTTTGTGGTTCCC
ACGCATGGCCTACGCGGGGGCGTACGTCGTAGGCGTACGGCGACGCATTC
GGTGCGGTGCGGTGAGTTACTTCATGGCCACGATTCCCTCCTCTCGATGT
TTACAAACGACAAGCCACGATTCCCATTGCCCTCGCGTTTTTATCCCCTG
ACTACTCGTGTCGTCAGGGTCGTATTTGCGTGTAGCGTGTCCATTCACCA
CATCACTCTTACCTTTTTTGGCAGAAGAAAACTTAACGTAATGCTTCTCG
GGATGGAGGTGACCTCTTACCTCTTTCGGCGCCTCATCGCTCGTTGCCGT
CAATTTTTCGTTTTCGATCTTTGGGAGTCGACTTATACTGCCCCGGTTCT
TGGATGTACCCTATTTAGTAACAGTTAA
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