mRNA_H-elongata_contig124214.1821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124214.1821.1
Unique NamemRNA_H-elongata_contig124214.1821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.280e-49
Identity = 95/106 (89.62%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMDEFNEPGSSKF+FLLSTRAGGLGINLATADVV          VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK
Sbjct:  583 QMDEFNEPGSSKFLFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 688
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A448YY09_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY09_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.020e-44
Identity = 86/106 (81.13%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVVV----------DLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMDEFN  GSSKF+FLLSTRAGGLGINLATAD+VV          DLQAMDRAHRIGQ KPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+N SL+K
Sbjct:  303 QMDEFNAEGSSKFLFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQKKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNTSLNK 408
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: F0YAG5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG5_AURAN)

HSP 1 Score: 160 bits (406), Expect = 2.090e-44
Identity = 85/106 (80.19%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVVV----------DLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMD FN PGS KF FLLSTRAGGLGINLATAD+VV          DLQAMDRAHRIGQTKPV VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA+L K
Sbjct:  488 QMDVFNAPGSEKFAFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAALGK 593
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: B7G2T7_PHATC (Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T7_PHATC)

HSP 1 Score: 162 bits (409), Expect = 3.150e-44
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMDEFN  GSSKF FLLSTRAGGLGINLATAD+V          VDLQAMDRAHRIGQTKPV+VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+++SL+K
Sbjct:  516 QMDEFNAEGSSKFAFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQHSSLEK 621
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A1E7ETM7_9STRA (SNF2_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETM7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.990e-44
Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVVV----------DLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMDEFN  GS KF+FLLSTRAGGLGINLATAD+VV          DLQAMDRAHRIGQ KPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA++DK
Sbjct:  368 QMDEFNAEGSPKFLFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQKKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAAVDK 473
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 160 bits (406), Expect = 7.990e-44
Identity = 85/106 (80.19%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVVV----------DLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMD FN PGS KF FLLSTRAGGLGINLATAD+VV          DLQAMDRAHRIGQTKPV VFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+NA+L K
Sbjct:  488 QMDVFNAPGSEKFAFLLSTRAGGLGINLATADIVVLYDSDWNPQVDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNAALGK 593
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: B8C3Q3_THAPS (Atpase-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q3_THAPS)

HSP 1 Score: 160 bits (405), Expect = 9.670e-44
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QM+EFN PGSSKF FLLSTRAGGLGINLATAD+V          VDLQAMDRAHRIGQTKPV+VFRFI+EGTVEEKI+ERAD+KLFLDAAVIQQGRLAE+N  L K
Sbjct:  367 QMEEFNAPGSSKFCFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFISEGTVEEKIIERADKKLFLDAAVIQQGRLAEQNTKLSK 472
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A1Z5JHP3_FISSO (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHP3_FISSO)

HSP 1 Score: 160 bits (405), Expect = 1.100e-43
Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 QMDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            QMDEFN  GS KF FLLSTRAGGLGINLATAD+V          VDLQAMDRAHRIGQTKPV+VFRFITEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+++SL+K
Sbjct:  524 QMDEFNRVGSPKFAFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAMDRAHRIGQTKPVQVFRFITEGTVEEKIIERADRKLFLDAAVIQQGRLAEQHSSLEK 629
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A7S2MKX3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKX3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.090e-43
Identity = 83/105 (79.05%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    4 MDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            MD FNEPGS  F FLLSTRAGGLGINLATAD+V          VDLQAMDRAHRIGQTKPV+VFRF+TEGTVE+KIVERADRKLFLDAAVIQQGRLAE+N  L K
Sbjct:   40 MDRFNEPGSPYFCFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVRVFRFVTEGTVEDKIVERADRKLFLDAAVIQQGRLAEQNNQLSK 144
[Close]
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Match: A0A7S2BNI9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNI9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.380e-43
Identity = 83/105 (79.05%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    4 MDEFNEPGSSKFIFLLSTRAGGLGINLATADVV----------VDLQAMDRAHRIGQTKPVKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK 288
            MD FNEP S  F FLLSTRAGGLGINLATAD+V          VDLQAMDRAHRIGQTKPVKVFRF+TEGTVEEKI+ERADRKLFLDAAVIQQGRLAE+N +L K
Sbjct:  121 MDRFNEPNSKYFAFLLSTRAGGLGINLATADIVILFDSDWNPQVDLQAMDRAHRIGQTKPVKVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGRLAEQNNNLSK 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124214.1821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP7_9PHAE1.280e-4989.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448YY09_9STRA2.020e-4481.13Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
F0YAG5_AURAN2.090e-4480.19Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
B7G2T7_PHATC3.150e-4480.19Imitation switch isoform 1, alias nucleosome remod... [more]
A0A1E7ETM7_9STRA3.990e-4480.19SNF2_N-domain-containing protein n=1 Tax=Fragilari... [more]
F0YAG6_AURAN7.990e-4480.19Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
B8C3Q3_THAPS9.670e-4479.25Atpase-like protein (Fragment) n=1 Tax=Thalassiosi... [more]
A0A1Z5JHP3_FISSO1.100e-4380.19SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A7S2MKX3_9STRA3.090e-4379.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BNI9_9STRA6.380e-4379.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124214contigH-elongata_contig124214:513..1650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2850.Phatr28551
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.SLIDE
EggNOG OGs2XE4Y@2836,COG0553@1,KOG0385@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124214.1821.1prot_H-elongata_contig124214.1821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124214 513..1647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.6420279-CDS-H-elongata_contig124214:512..6981622929731.6420279-CDS-H-elongata_contig124214:512..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124214 513..698 -
1691679136.4263132-CDS-H-elongata_contig124214:512..6981691679136.4263132-CDS-H-elongata_contig124214:512..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124214 513..698 -
1622929731.6652186-CDS-H-elongata_contig124214:1548..16471622929731.6652186-CDS-H-elongata_contig124214:1548..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124214 1549..1647 -
1691679136.4384944-CDS-H-elongata_contig124214:1548..16471691679136.4384944-CDS-H-elongata_contig124214:1548..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124214 1549..1647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.6945648-UTR-H-elongata_contig124214:1647..16501622929731.6945648-UTR-H-elongata_contig124214:1647..1650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124214 1648..1650 -
1691679136.4484582-UTR-H-elongata_contig124214:1647..16501691679136.4484582-UTR-H-elongata_contig124214:1647..1650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124214 1648..1650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124214.1821.1

>prot_H-elongata_contig124214.1821.1 ID=prot_H-elongata_contig124214.1821.1|Name=mRNA_H-elongata_contig124214.1821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MDEFNEPGSSKFIFLLSTRAGGLGINLATADVVVDLQAMDRAHRIGQTKP
VKVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAEKNASLDK
back to top

mRNA from alignment at H-elongata_contig124214:513..1650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124214.1821.1 ID=mRNA_H-elongata_contig124214.1821.1|Name=mRNA_H-elongata_contig124214.1821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-elongata_contig124214:513..1650- (Himanthalia elongata Himel1 dioecious)
CAGATGGACGAGTTCAACGAGCCCGGTTCGTCGAAGTTCATCTTCCTTCT
ATCTACCCGTGCGGGAGGTCTGGGCATCAACCTCGCCACGGCAGATGTGG
TCGTTCTGTATGACTCCGACTGGAACCCTCAGGCAAGCGAAGCCATCCGC
ATTGGAGACGAGCAGCCATTATGGCATCGCCATCGAGAGAGCGACAGAGA
GATCAAATCGCGTCTCTTAATCCAAATCACGCCTTCCAATCCGAATCCAA
TCCGAATCGCGGCTCGTAGTACGAATTTTGGCTCCCAAGTTTGAATGGTT
GCATTGGTTTGCTTTTTCTGGTGCCAGTTTTTGGCGTCGGGCTTCGTACG
GTTTTCTATTGAAGTGCTAAATGAGGGCGGGTTGGGGGGGGGGGAGATTC
GAAGGACTTGTTTAGAACCGGACATGCTGTGTCCTGAGGGGGGGCATGAA
AGGGCCATTTCGATGGCGAGGCATGGACCTTGAGGAGGCGTTTCGTCTGT
TGTGATGGATGGATTGACCACTTTTTCAAGACTATTTTTTATATTTTTGT
ACACGTTCTAAATGTAGTATGAGTACTGTACCACTCCTTCCCCCTCTATA
GCGCCCCTAAGGAGCTTCATGCGGTGTAAAAAAAATCCAATCTTGCGGGT
TAGGGTTAAGAGTAGCACTTGGGGGGTTTCTTTCCTCTATTCTTTACAGT
ACACTCTCTTGTTGGAATTAGTTTGATTGGTCGGGACTGACAGTCTCGTG
ATGTTGAGGTATAGCTTATCGCGTGTGTGCATTTGATTGGTTCACTAACT
CTTTTAAGCAACTTGAACTTCAATCACAAGACACACGACCTAAATTAATA
CACACACACTTAGATAAATGTATTTTGGTCCGTCCTCGAATTCCCTGAAA
TTTTTCCGCATCCGCGCACGCACACACACGCCTCCTCGAATAATGTCACC
AGGTGGATCTGCAGGCCATGGACCGTGCTCACCGCATCGGGCAGACGAAG
CCGGTAAAGGTGTTCCGCTTTATCACGGAGGGCACGGTGGAAGAAAAAAT
TGTGGAGAGGGCAGACCGCAAGCTCTTCCTCGACGCCGCCGTCATCCAGC
AGGGGAGACTGGCAGAGAAAAACGCCTCCCTGGACAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig124214:513..1650-

>mRNA_H-elongata_contig124214.1821.1 ID=mRNA_H-elongata_contig124214.1821.1|Name=mRNA_H-elongata_contig124214.1821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig124214:513..1650- (Himanthalia elongata Himel1 dioecious)
ATGGACGAGTTCAACGAGCCCGGTTCGTCGAAGTTCATCTTCCTTCTATC
TACCCGTGCGGGAGGTCTGGGCATCAACCTCGCCACGGCAGATGTGGTCA
TGGACGAGTTCAACGAGCCCGGTTCGTCGAAGTTCATCTTCCTTCTATCT
ACCCGTGCGGGAGGTCTGGGCATCAACCTCGCCACGGCAGATGTGGTCGT
GGATCTGCAGGCCATGGACCGTGCTCACCGCATCGGGCAGACGAAGCCGG
TAAAGGTGTTCCGCTTTATCACGGAGGGCACGGTGGAAGAAAAAATTGTG
GAGAGGGCAGACCGCAAGCTCTTCCTCGACGCCGCCGTCATCCAGCAGGG
GAGACTGGCAGAGAAAAACGCCTCCCTGGACAAGGTGGATCTGCAGGCCA
TGGACCGTGCTCACCGCATCGGGCAGACGAAGCCGGTAAAGGTGTTCCGC
TTTATCACGGAGGGCACGGTGGAAGAAAAAATTGTGGAGAGGGCAGACCG
CAAGCTCTTCCTCGACGCCGCCGTCATCCAGCAGGGGAGACTGGCAGAGA
AAAACGCCTCCCTGGACAAG
back to top