mRNA_H-elongata_contig1242.1820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1242.1820.1
Unique NamemRNA_H-elongata_contig1242.1820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1242.1820.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.740e-8
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 WVCDTGASQHFINDSAHMLDFRECQKFMQTASGKIFPIEGHEDIILHLRSEGEVVHLTFRNVAYVPQLSHNLMSLGAVA 237
            WV D+GAS HF N+S+   +       ++ A+G    IEG   I L + +   +V +  +NV+Y+P L +NL SL  V+
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVS 375
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BLAST of mRNA_H-elongata_contig1242.1820.1 vs. uniprot
Match: G4TQV9_SERID (Integrase catalytic domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TQV9_SERID)

HSP 1 Score: 50.1 bits (118), Expect = 3.630e-5
Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 1 
Query:    4 VCDTGASQHFINDSAHMLDFRECQKFMQTASGKIFPIEGHEDIILHLRSEGEVV--HLTFRNVAYVPQLSHNLMSLGAV 234
            + D+GAS H       +LD +   + ++ A G + P EG    + H    G +      F NV YVP LS+NL+S GA+
Sbjct:  423 IADSGASTHMSCVRERVLDMKPTDRMVKLADGTLVPAEGIGHSLFHASINGVLASKQTVFPNVLYVPSLSNNLISTGAL 501
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BLAST of mRNA_H-elongata_contig1242.1820.1 vs. uniprot
Match: A0A0G4G0M4_VITBC (Integrase catalytic domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G0M4_VITBC)

HSP 1 Score: 49.7 bits (117), Expect = 4.920e-5
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    4 VCDTGASQHFINDSAHMLDFRECQKF-MQTASGKIFPIEGHEDIILHLRS-EGEVVHLTFRNVAYVPQLSHNLMSLGAV 234
            + D+GA +H + D  + L+    +++ +++ +G     EG  D+ L +R+ EG VV +  ++V YVP LS NL+S GA+
Sbjct:  468 IADSGAQKHCMFDKGNFLNLTPTKRYRIRSVTGDTTMAEGVGDVQLFVRTAEGRVVEMRVKDVLYVPDLSVNLLSAGAL 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1242.1820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6G0X3B5_9STRA6.740e-835.44Integrase catalytic domain-containing protein n=1 ... [more]
G4TQV9_SERID3.630e-534.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A0G4G0M4_VITBC4.920e-534.18Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1242contigH-elongata_contig1242:15965..16204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.5789988-CDS-H-elongata_contig1242:15964..162041622929731.5789988-CDS-H-elongata_contig1242:15964..16204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1242 15965..16204 +
1691679136.4173155-CDS-H-elongata_contig1242:15964..162041691679136.4173155-CDS-H-elongata_contig1242:15964..16204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1242 15965..16204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1242.1820.1prot_H-elongata_contig1242.1820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1242 15965..16204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1242.1820.1

>prot_H-elongata_contig1242.1820.1 ID=prot_H-elongata_contig1242.1820.1|Name=mRNA_H-elongata_contig1242.1820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
WVCDTGASQHFINDSAHMLDFRECQKFMQTASGKIFPIEGHEDIILHLRS
EGEVVHLTFRNVAYVPQLSHNLMSLGAVAN
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mRNA from alignment at H-elongata_contig1242:15965..16204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1242.1820.1 ID=mRNA_H-elongata_contig1242.1820.1|Name=mRNA_H-elongata_contig1242.1820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig1242:15965..16204+ (Himanthalia elongata Himel1 dioecious)
TGGGTGTGTGACACCGGCGCTTCGCAGCATTTTATCAATGACTCTGCGCA
CATGCTCGACTTCCGTGAATGCCAGAAGTTTATGCAGACGGCTAGCGGGA
AGATATTCCCGATCGAGGGTCACGAGGACATTATCTTGCACCTTCGGTCT
GAGGGAGAGGTGGTACATCTCACGTTTCGTAACGTAGCGTATGTGCCACA
ACTTTCTCACAACCTGATGTCACTTGGAGCAGTAGCCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig1242:15965..16204+

>mRNA_H-elongata_contig1242.1820.1 ID=mRNA_H-elongata_contig1242.1820.1|Name=mRNA_H-elongata_contig1242.1820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig1242:15965..16204+ (Himanthalia elongata Himel1 dioecious)
TGGGTGTGTGACACCGGCGCTTCGCAGCATTTTATCAATGACTCTGCGCA
CATGCTCGACTTCCGTGAATGCCAGAAGTTTATGCAGACGGCTAGCGGGA
AGATATTCCCGATCGAGGGTCACGAGGACATTATCTTGCACCTTCGGTCT
GAGGGAGAGGTGGTACATCTCACGTTTCGTAACGTAGCGTATGTGCCACA
ACTTTCTCACAACCTGATGTCACTTGGAGCAGTAGCCAATTGGGTGTGTG
ACACCGGCGCTTCGCAGCATTTTATCAATGACTCTGCGCACATGCTCGAC
TTCCGTGAATGCCAGAAGTTTATGCAGACGGCTAGCGGGAAGATATTCCC
GATCGAGGGTCACGAGGACATTATCTTGCACCTTCGGTCTGAGGGAGAGG
TGGTACATCTCACGTTTCGTAACGTAGCGTATGTGCCACAACTTTCTCAC
AACCTGATGTCACTTGGAGCAGTAGCCAAT
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