mRNA_H-elongata_contig12419.1819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12419.1819.1
Unique NamemRNA_H-elongata_contig12419.1819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 8.440e-124
Identity = 196/220 (89.09%), Postives = 213/220 (96.82%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPKVDLSRFVKWPRYIR+QRQRKILVQRLKVPPSINQFSKAIDKNQATEL K+LMKYQPEDKKAKQQRLKEIAAAKEAGK+PAPSKAPKVIK+GLKHVTTLIEEQKASLV+IAHDV PIELVVWLPALCRKM +PYCIMKGKARLGT+VH+KNAAV+CLT VNKED+S+L+ LK+NF+A FNEGF RKWGGG+MGLKT+RKLEKRQKAIEAELAKKAQY
Sbjct:   37 IQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 296 bits (758), Expect = 1.570e-89
Identity = 159/220 (72.27%), Postives = 188/220 (85.45%), Query Frame = 3 
Query: 1095 KVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEA-GKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQRKWGGGIMGLKTKRKLEKRQKAIEAELAKK--AQY 1745
            K DLSR+VKWPR +RIQRQRKIL+QRLKVPP+I QFS+ ++KNQATEL KLL+KYQPE KKAKQQRLKE+AAA    G+ P P+     +KYGLKHVTTLIE+++A LV IAHDV+P+ELVVWLPALCRKM VP+C++K KARLGT+ HKKNAAV+ LT VNKED ++L+TL ANF+A FN+   RKWGGGIMGLKT+RKLEKRQKA+EAELAKK  AQY
Sbjct:   41 KRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255
[Close]
BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 285 bits (730), Expect = 1.590e-85
Identity = 148/219 (67.58%), Postives = 176/219 (80.37%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQ--RKWGGGIMGLKTKRKLEKRQKAIEAELAKK 1736
            +QP  DLSRFVKWPRY+R+QRQ+KIL QRLKVPP++NQF+  +DKNQA EL KLLMKYQPEDK AK  R+K +A AK AG      KAP V+K+GLKHVT L+E +KA LV IA DVDPIELVVWLPALC+KMDVPYCI+K K+RLGT+VH+K AAV CLT V KED   L+ L++NF A +N+     RKWGGGIMGLKT+ KL KR+KA++AELAKK
Sbjct:   36 IQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 284 bits (727), Expect = 6.190e-85
Identity = 147/222 (66.22%), Postives = 180/222 (81.08%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEG--FQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPS+NQFS  +DKN AT+L KLL+KYQPE K AK  RL+ IAA KE    P     P V+K+GL HVT+L+E +KA LV+IAHDVDPIELVV+LPALCR+ D+PYCI+KGK+RLG +VH+KNAAV+ LT+VNKED ++ ++L   F A FNE    +RKWGGGIMGLKT++KLE R+KA+ AE AKKAQY
Sbjct:   49 IQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 284 bits (726), Expect = 6.810e-85
Identity = 142/214 (66.36%), Postives = 176/214 (82.24%), Query Frame = 3 
Query: 1101 DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQ 1742
            DLSR+V+WPRY+RIQRQ+KIL+QRLKVPPSINQF + +DKNQA+EL KLL+KYQPE K AK  RL+ +A A  A +       P  +K+GLKHVTTLIE++KA LV+I HDVDPIELV+WLPALCRKM+VP+ I+KGK+RLGT+ HKK  +V+CLT+VNKED+S+L TL  NF A FN+  +RKWGGGIMGLKT+ KL+KR KA+E E AKKA+
Sbjct:   42 DLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 283 bits (724), Expect = 1.900e-84
Identity = 152/222 (68.47%), Postives = 178/222 (80.18%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGF--QRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQF+  IDKN A +L KLL+KYQPE K AK  RL+ IAA KE    P     P VIKYGL HVT+LIE +KA LV+IAHDV+PIELVV+LPALCRK D+PY I+KGKARLG +VHKKNAAV+ LT+VNKED S+ ++L + F   FN+    +RKWGGGIMGLKT++KLE R+KAI AE AKKAQY
Sbjct:   53 IQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269
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BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 283 bits (723), Expect = 2.240e-84
Identity = 149/222 (67.12%), Postives = 180/222 (81.08%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNE--GFQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS  +DKN AT+L KLL+KYQPE K AK  RL+ IAA K+    P     P V+K+GL HVT+LIE +KA LV+IAHDV+PIELVV+LPALCR+ D+PYCI+KGKARLG +VH+KNAAV+ LT+VNKED ++ ++L   F A FNE    +RKWGGGIMGLKT++KLE R+KAI AE AKKAQY
Sbjct:   48 IQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: A0A7S0LF41_9EUKA (60S ribosomal protein L7a n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LF41_9EUKA)

HSP 1 Score: 282 bits (722), Expect = 2.630e-84
Identity = 143/214 (66.82%), Postives = 175/214 (81.78%), Query Frame = 3 
Query: 1101 DLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQ 1742
            DLSR+V+WPRY+RIQRQ+K+L+QRLKVPPSINQF + +DKNQA+EL KLL+KYQPE K AK  RL+ +A A  A ++      P  +KYGLKHVTTLIE++KA LVII+HDVDPIELV+WLPALCRKM+VP+CI+KGK+RLGT+ HKK  +V+ LT VN ED+S+L TL  N    FNE  +RKWGGGIMGLKT+ KL KR +AIEAELAKKA+
Sbjct:   43 DLSRYVRWPRYVRIQRQKKVLLQRLKVPPSINQFRRTLDKNQASELFKLLVKYQPETKAAKATRLETLAKATAAKENTTSGPPPATLKYGLKHVTTLIEQKKAKLVIISHDVDPIELVLWLPALCRKMNVPFCIVKGKSRLGTLTHKKTCSVVALTAVNNEDESKLKTLAENCRVQFNENVERKWGGGIMGLKTQAKLTKRAQAIEAELAKKAE 256
[Close]
BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: M4B6Z0_HYAAE (60S ribosomal protein L7a n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6Z0_HYAAE)

HSP 1 Score: 281 bits (718), Expect = 1.160e-83
Identity = 149/222 (67.12%), Postives = 179/222 (80.63%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEGF--QRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQFS A+DKN AT+L KLL+KYQPE K AK  RL+ IAA KE    P     P V+K+GL HVTTLIE ++A LV+IAHDVDPIELVV+LPALCR+ D+PYCI+KGKARLG +VH+KNAA + LT+VNKED ++ ++L     A +N+    +RKWGGGIMGLKT++KLE R+KAI AE AKKAQY
Sbjct:   48 IQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFSYALDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PSVVKFGLNHVTTLIETKRAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIIKGKARLGQLVHQKNAAAVALTHVNKEDKAKFDSLAGVVRAKYNDDSTSRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV)

HSP 1 Score: 281 bits (718), Expect = 1.240e-83
Identity = 149/222 (67.12%), Postives = 177/222 (79.73%), Query Frame = 3 
Query: 1086 LQPKVDLSRFVKWPRYIRIQRQRKILVQRLKVPPSINQFSKAIDKNQATELCKLLMKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEEQKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNAAVLCLTNVNKEDDSRLNTLKANFSAHFNEG--FQRKWGGGIMGLKTKRKLEKRQKAIEAELAKKAQY 1745
            +QPK DLSRFV+WP+ +R+QRQ KIL  RLKVPPSINQF+  +DKN AT+L KLL+KYQPE K AK QRL++IAA KE    P     P VIKYGL HVT+LIE +KA +V IAHDV PIELVV+LPALCRKMD+PYCI+KGKARLG +VHKKNAAV+ LT VNKED ++ ++L   F A FN+    +RKWGGGIMGLKT++KLE R KA+ AELAKKAQY
Sbjct:   50 IQPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12419.1819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI8.440e-12489.0960S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A6V1R9A7_HETAK1.570e-8972.2760S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
F0Y2N8_AURAN1.590e-8567.5860S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
A0A3R7JAR0_9STRA6.190e-8566.2260S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
A0A7S3HBR5_9STRA6.810e-8566.3660S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
K3WB90_GLOUD1.900e-8468.4760S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]
A0A0P1B814_PLAHL2.240e-8467.1260S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
A0A7S0LF41_9EUKA2.630e-8466.8260S ribosomal protein L7a n=1 Tax=Coccolithus braa... [more]
M4B6Z0_HYAAE1.160e-8367.1260S ribosomal protein L7a n=1 Tax=Hyaloperonospora... [more]
T0QDT5_SAPDV1.240e-8367.1260S ribosomal protein L7a n=3 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12419contigH-elongata_contig12419:346..4582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue1.2e-75
Seed eggNOG ortholog2880.D8LN40
Preferred nameDOCK4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG1358@1,KOG3166@2759
EC3.1.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L7Ae/L8/Nhp2 family
Ec32 orthologEc-05_003390.1
Exons4
Model size3082
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12419.1819.1prot_H-elongata_contig12419.1819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12419 1680..2942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.366362-UTR-H-elongata_contig12419:345..16791622929731.366362-UTR-H-elongata_contig12419:345..1679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 346..1679 -
1691679136.3535287-UTR-H-elongata_contig12419:345..16791691679136.3535287-UTR-H-elongata_contig12419:345..1679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 346..1679 -
1622929731.5108933-UTR-H-elongata_contig12419:2942..30351622929731.5108933-UTR-H-elongata_contig12419:2942..3035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 2943..3035 -
1691679136.3993292-UTR-H-elongata_contig12419:2942..30351691679136.3993292-UTR-H-elongata_contig12419:2942..3035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 2943..3035 -
1622929731.5283563-UTR-H-elongata_contig12419:3425..45821622929731.5283563-UTR-H-elongata_contig12419:3425..4582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 3426..4582 -
1691679136.4093604-UTR-H-elongata_contig12419:3425..45821691679136.4093604-UTR-H-elongata_contig12419:3425..4582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12419 3426..4582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.3887117-CDS-H-elongata_contig12419:1679..19131622929731.3887117-CDS-H-elongata_contig12419:1679..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 1680..1913 -
1691679136.363938-CDS-H-elongata_contig12419:1679..19131691679136.363938-CDS-H-elongata_contig12419:1679..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 1680..1913 -
1622929731.406424-CDS-H-elongata_contig12419:2109..22681622929731.406424-CDS-H-elongata_contig12419:2109..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 2110..2268 -
1691679136.3787966-CDS-H-elongata_contig12419:2109..22681691679136.3787966-CDS-H-elongata_contig12419:2109..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 2110..2268 -
1622929731.4838407-CDS-H-elongata_contig12419:2837..29421622929731.4838407-CDS-H-elongata_contig12419:2837..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 2838..2942 -
1691679136.3917348-CDS-H-elongata_contig12419:2837..29421691679136.3917348-CDS-H-elongata_contig12419:2837..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12419 2838..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12419.1819.1

>prot_H-elongata_contig12419.1819.1 ID=prot_H-elongata_contig12419.1819.1|Name=mRNA_H-elongata_contig12419.1819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MKYQPEDKKAKQQRLKEIAAAKEAGKDPAPSKAPKVIKYGLKHVTTLIEE
QKASLVIIAHDVDPIELVVWLPALCRKMDVPYCIMKGKARLGTMVHKKNA
AVLCLTNVNKEDDSRLNTLKANFSAHFNEGFQRKWGGGIMGLKTKRKLEK
RQKAIEAELAKKAQY*
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mRNA from alignment at H-elongata_contig12419:346..4582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12419.1819.1 ID=mRNA_H-elongata_contig12419.1819.1|Name=mRNA_H-elongata_contig12419.1819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4237bp|location=Sequence derived from alignment at H-elongata_contig12419:346..4582- (Himanthalia elongata Himel1 dioecious)
TCAAGTCCACCCCCAAGAAGGTCGCCGACCCTCTCTTCCCCGCCCGTAAG
AAGAGCTTCAGGATCGGCCGCGACATCCAGGTACTGTCATACCATACCAT
TCTCAAAACGCCCCTTGGCAAGACCCAAGTATGTGGGCGCGAAGGTCGAT
GGTCACAAGAGGTGTCCGCTAATTATCTCTCACTTATTTACTACCTTTCT
TCGACACAGATAGCCTGTCTTGGAGGTAAACGTTGTAGAGCTGGAGAGTT
GCACAACACACCCTGTAAATAGTATATAACTTTAATAACTTTAAGATATC
AAGAGCTCGATGATTGTTAAAACGACATACGACAGAGTAGAGTGCGCAAT
GAAATGGTGTGAAGCCCTCCCTGCAAACTCTCGCCATCCTATCGCGATGA
AATGTGTTACTGTGCACGGACGGCGTGAGTCAATGCTTCTCCCTTTTATC
GTCCCTTTTTGTCAGTTTTGCTCCGTCAACCCCTCTTTTTTGGTGAAATA
CCGGAGGCCAAAGGCGAACAATTAAAAATGATGAGGTCGGAGATGAGGAA
AGTCAGATACCCGAGGTTTTCAATTATTTCGGCAAGGAATGAATTCAAAG
TAGCGGCGATGCCACCGCGCCGCCATGACAAAAATTTCGGTGGTAGTTTT
CTTGTAGCGCCGTTGCCCCGGGCGTAATGATACAAATGCAGGGGTTTCCT
ACTCAAATAGGCAAGTCCAGTGTACTATCTACTGAATCTTGCAACGAAAG
GTACCCGTTAAAGGTAGATCTCTGTTCGTGGGGATGATTGCTCTTCGAGT
AAAGCATTCATAAAAAACAAATCTAAGGTCATTATCTAAGTCGTAATTAA
CTGATTCAGTAACTTTTAAATACTCATTAATAGAATGCGTTTAGTAGGCA
ATGCCTCGGTGGTGGCGTTTATTTTATTGCTGCCCATCCATCTGTGATTC
ATTTGATGACTTGATCCGTTAAATGGCCTTTGTATTCCCTGTTGCCCTTC
TCGTCTTCCTTTGTGACCTCGTTGCTTCTGTTGATTATCACACCACAAAC
GTGTTTGTCGAACCTTTCCCCCGAACCTCGCCTAACTACAGCCGAAGGTG
GACCTCTCGCGTTTCGTGAAGTGGCCTCGCTACATCCGCATCCAGCGCCA
GCGCAAGGTGCGACACCTCGCGATCATACCGCATGACGTCATCTCTTTAT
TGTCACAATCCATGTCATGATGTCATGTTGACTCTCCGCTGTCGGGCTTG
TCTTTATCCCTTGTAAATTAATTATAAAATTATTCGAAAAATTGTATGGT
GGTAAACAAAACCGTGAGCATTGTGAGCGTTACCGGGAATCTCGTTCTCT
TTGGATGATTGATTGAACTTTTGTTGGCTTACCAAGTTCACCTTCCACGT
TCTAGGGATTTTTGCTTGCTTAGTCGCTCAACCGTTTTCCCGCGCATAGC
TATATGCCTCAGCCACGCCCGATCCGGTAAGAGGAAGGATATGAGAATAT
AATATTGTTTTTGGCTCGGAAATATATTATACTTTGTTTTTGTACAGATC
CTGGTGCAGCGGCTTAAGGTGCCCCCGAGCATTAACCAATTCTCCAAGGC
CATCGACAAGAACCAGGCTACCGAGCTCTGCAAGCTGCTTATGAAGTACC
AGCCGGAGGACAAGAAAGCTAAGCAGCAGCGTCTGAAAGAGATTGCCGCC
GCCAAGGAAGCTGGAAAAGATCCCGCCCCTTCCAAGGCTCCGAAGGTATG
GAAACCCATGGTGCTTTTTATTGTTTTGAGATGTACCAAGTATATAGGAG
GTTTTATATGGTAGACGTGGCCTTGGTGGTCTTTTCACATTTTTTACATC
TGCTGTTATTGTGTGTCATGCCAGTTTTATAGAGGGCTTGCCTCATGCGT
ATTATTTTGTGAACCCCAAAGGACCAGGGTTAGAAATGATGAAATTTCAC
CCCGCTCAAGTCTTTCTCGCAGATAAGCACGCCATTTCTCCATCCTCATC
AAAAGAGTGACAGTCCGTCGGCAGGTACCACTACCCTGTGCACTTAAGTC
AAGTCACAAGTTACCCTCCCAAATCGGGCTTCGTCTCTCGGTTCTCAATT
AATAACTTTTTTGGGCGGGGGGCGTGGCCCATCATAGCGACGTTCGATTT
AATCCACCAAAATGACTCCGCCGCGGCTATGTAAGCCTTACGACTTTCCT
CGATATCACATTGAGATCCGGGCAAGGCATCGCCAGAGCTCTTCTGCAAT
CTCAATAATATAATACTGGATGTTAACCAGTTTAATGGTGATAATTTGTT
TGTTTGTGGTATAGGTGATCAAGTACGGACTCAAGCACGTGACGACTCTG
ATCGAGGAACAAAAGGCCTCTCTAGTTATCATCGCGCATGACGTCGACCC
CATCGAGCTCGTGGTGTGGCTTCCCGCCCTCTGTCGCAAGATGGATGTAC
CGTACTGCATCATGAAGGGCAAGGTGAGAACTTTTATTGATAGTTGTTCA
TGCAAGATATCAGACACTTCGGCAGAAGTGTCGTTCGAGAAGGCATCACA
ATACCTACCACTGGATAGAAATGTTGATTTTGAATAAGTGCTGTCTCTTA
TGACCGTTTTTATTTTTTATTTTTTTAACCTTAACCTCGTTCGTTTTCGT
AATTAATTCCGCCATGTAGGCCCGCCTCGGCACCATGGTCCACAAGAAAA
ACGCAGCGGTGCTTTGCCTGACGAATGTCAACAAGGAAGATGATAGCAGA
CTTAACACCCTTAAGGCTAACTTCAGCGCGCATTTCAACGAAGGATTCCA
GAGGAAGTGGGGTGGTGGCATTATGGGTCTCAAGACCAAACGCAAGCTGG
AAAAGAGGCAGAAGGCGATTGAAGCTGAATTGGCAAAGAAGGCCCAGTAC
TGAAAATATCCTTCTTCTTCGCGCTCCACCGTTTGATGCCTTGCTCGGAG
ACGATGTAGACAGATCGAGGATGGACTCGGCGCATGTCTGTATTCGATTT
TGTTAGCATAGGTCGAGGGTTTGGGAGGGAAAACTTCCAAATTGTGCCTT
TCATGACCTCTTCGCGCAAGTTGGTTGCTTGCGGCGGGGGCTATTACGAT
ATGGTCGTTGGGAGTATGGCAATTTGTCATACACTCGTTTCGAAGGCGGG
TTGATCTTGAAAAATGATAAATTGGCAATAATATATTATCGTGTGTGCCG
CTGTAGGGGATATACCCCTCCCCCCCCCTCCAAAAAAAAATAACCGTTGT
TTTCCAACTCGAATCAAGTTGATCCTTAATCTACTGTGTGGTGATGACGT
CATTATAGCAGAGTAAGGATCAACCGGATTTGGTTGCCTCATGCTTATGG
TCAGCTGAGCAGGAAAATTATTTTTCCTTGTACCCGTCCGCGTCGAAGAG
TTTGTGATCGCAAGACGGGTAGTCCCGTCCCGTCCCGCGTCAGCCCCCTC
ATTCTCAGAACCCAGGCTGAAACTGGTTGAATCTGGTACGTACTCCCGGG
ATCTTCCCGTTTTCCGCGATCGGACTAATCCCGATTGTATCAGGCAACGT
AGTTGCGTACTGATGGCGTATACCTCGGAGAGTCCGCCGGTACTGTGCCA
GCATTTTTTGAGGTAGCTGAGTAACGTGTGTAGCCTTCTTCGTGAGGTAG
CACCATGTTTGTTACCAATTATTGTGCCTCAATTTTCCCACACCCACTAA
TAATAGTACATTATGATGTAATAGTATCCGATACAGTAATTATAGTAGGT
AGATATTTGAACTCAAATTGCGGATGTTTCTTTGCAATGGAGAGTTCTAG
TCCTAGTTTCTTCAATTTTTATTGTGACACTCATTTTTTTCGTGCTTGAC
CTCATGAGGCTGCGTTCCCAAGTATTTGGCTGTTTATTTGGTATTTTGGC
GGTTCGAAGCGCGGTCTGCAGACTAGAAAAAAATCGTTTCTATTTACAAT
CGTGGAATCTCATTGGGTACAAACATAGATTCTATCGTCTGTATTCTTGT
TTGCGATCCGCCAGTGCAAATCTGGACCCCTACCGCCAGCTGCACACAGC
ACACACCCACCACAATTTCTGGGAGCAAACACAACGGCCCTGGCTCCGCC
GCCGAAACTTATGGTGGCAGCTGGCTCCACCTTGACTCTTCTCTGCAGTT
TCGTTGCAAACCGTTCATCCAGTGTTGAGAGCTGAGTCTGGTTATGAGCC
GAGGGTAAAGTTATTCCTTGAGTTTTGCGATGATAAT
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Coding sequence (CDS) from alignment at H-elongata_contig12419:346..4582-

>mRNA_H-elongata_contig12419.1819.1 ID=mRNA_H-elongata_contig12419.1819.1|Name=mRNA_H-elongata_contig12419.1819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig12419:346..4582- (Himanthalia elongata Himel1 dioecious)
ATGAAGTACCAGCCGGAGGACAAGAAAGCTAAGCAGCAGCGTCTGAAAGA
GATTGCCGCCGCCAAGGAAGCTGGAAAAGATCCCGCCCCTTCCAAGGCTC
CGAAGATGAAGTACCAGCCGGAGGACAAGAAAGCTAAGCAGCAGCGTCTG
AAAGAGATTGCCGCCGCCAAGGAAGCTGGAAAAGATCCCGCCCCTTCCAA
GGCTCCGAAGGTGATCAAGTACGGACTCAAGCACGTGACGACTCTGATCG
AGGAACAAAAGGCCTCTCTAGTTATCATCGCGCATGACGTCGACCCCATC
GAGCTCGTGGTGTGGCTTCCCGCCCTCTGTCGCAAGATGGATGTACCGTA
CTGCATCATGAAGGGCAAGGTGATCAAGTACGGACTCAAGCACGTGACGA
CTCTGATCGAGGAACAAAAGGCCTCTCTAGTTATCATCGCGCATGACGTC
GACCCCATCGAGCTCGTGGTGTGGCTTCCCGCCCTCTGTCGCAAGATGGA
TGTACCGTACTGCATCATGAAGGGCAAGGCCCGCCTCGGCACCATGGTCC
ACAAGAAAAACGCAGCGGTGCTTTGCCTGACGAATGTCAACAAGGAAGAT
GATAGCAGACTTAACACCCTTAAGGCTAACTTCAGCGCGCATTTCAACGA
AGGATTCCAGAGGAAGTGGGGTGGTGGCATTATGGGTCTCAAGACCAAAC
GCAAGCTGGAAAAGAGGCAGAAGGCGATTGAAGCTGAATTGGCAAAGAAG
GCCCAGTACTGAGCCCGCCTCGGCACCATGGTCCACAAGAAAAACGCAGC
GGTGCTTTGCCTGACGAATGTCAACAAGGAAGATGATAGCAGACTTAACA
CCCTTAAGGCTAACTTCAGCGCGCATTTCAACGAAGGATTCCAGAGGAAG
TGGGGTGGTGGCATTATGGGTCTCAAGACCAAACGCAAGCTGGAAAAGAG
GCAGAAGGCGATTGAAGCTGAATTGGCAAAGAAGGCCCAGTACTGA
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