mRNA_H-elongata_contig124189.1818.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: D8LS39_ECTSI (Utp12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS39_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.320e-56 Identity = 119/193 (61.66%), Postives = 135/193 (69.95%), Query Frame = 1
Query: 28 GESG----VDRLIAGDELESEVVLRADHRVRSFDFAPS-----ARSGRSRSRGA--------STRVLVALHNNSMEVWGVES-----ATAAASAEQGIGGEAKASCS--------RLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
GE+G D ++AGDELES VVLR DHRVRSFDFAPS + GR RG+ STRVLV+LHNNSMEVWG+E A A+ +G+ + R+ +LDLQGHRSDVRAVA+SSD +MVASVSHGLAK WS+RTRQCVRS PCGFGLTVAFAPGDRHLLVGTKEGNLQV D
Sbjct: 370 GEAGRSTLTDSIVAGDELESSVVLRTDHRVRSFDFAPSMTASSSSGGRRGGRGSGSGGDGLDSTRVLVSLHNNSMEVWGLEGCCHAGAGKASKKAKGVDEDXXXXXXXXXXXXXXRMMVLDLQGHRSDVRAVAVSSDGAMVASVSHGLAKAWSARTRQCVRSAPCGFGLTVAFAPGDRHLLVGTKEGNLQVVD 562
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A835Z9P3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P3_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.510e-34 Identity = 83/166 (50.00%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAKASC--------SRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
D +IAGDELE+ V+R+ H+ R RGA RVL+ALHNNS+E+W V + R++ LD GHRSDVRAVAIS D ++ASVS G AK W++RTRQC+R+ PCGFGL AFAPGDRHLLVGTKEG LQV D
Sbjct: 359 DEVIAGDELEALAVVRSAHKTRD-------------GRGA--RVLLALHNNSLELWSVAAXXXXXXXXXXXXXXXXXXXXXXXXXVVERMSSLDAHGHRSDVRAVAISGDDQLIASVSKGEAKVWNARTRQCIRTTPCGFGLCCAFAPGDRHLLVGTKEGRLQVVD 509
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: E1ZIF0_CHLVA (Utp12 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIF0_CHLVA) HSP 1 Score: 119 bits (297), Expect = 7.070e-28 Identity = 72/170 (42.35%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAP--SARSGRSRSRGASTRV---LVALHNNSMEVWGVESATAAASAEQGIGGEAKAS-------CSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
DRL AGDEL+ +R+ H+ RS P SA G R AS+ V ++AL NNS+EVW V GGE R ++DL GHRSDVRA+A++SD S++ S S+ K W+ R+ C+R+VP G+GL FAPG+RH +VGTKEG +++ D
Sbjct: 353 DRLTAGDELQLVAAIRSKHKARSCAVVPAASASGGAGRRAAASSHVASLVLALTNNSLEVWDVRE-----------GGEQXXXXXXXXXXADRAQVIDLPGHRSDVRALALASDDSLLLSASNNCVKVWNPRSGACLRTVPSGYGLCALFAPGNRHAVVGTKEGGIEIFD 511
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A6U0TFN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TFN6_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.470e-27 Identity = 74/164 (45.12%), Postives = 102/164 (62.20%), Query Frame = 1
Query: 49 LIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGV----------ESATAAASAEQGIGGEAKASCS---RLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCG-FGLTVAFAPGDRHLLVGTKEG 498
LIAGDE+E +LR+ H++RSF F + G+ TRVL+AL+NNS+EV + E+A+A + E G++ S S R ++D+ GHRSDVRAV+IS DA++VASVS K W+ +T CVRS G L AFAPGDRH+++GT+EG
Sbjct: 374 LIAGDEIEFYALLRSPHKIRSFAFPQTGSDGKGH-----TRVLLALNNNSLEVHKLPMRHVLGGKSEAASALIAVEPVAEGKSDQSISMPVRTMVIDMHGHRSDVRAVSISKDAALVASVSAYSVKIWNRKTSNCVRSAAIGGLALCCAFAPGDRHVIIGTREG 532
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A3M7L422_AUXPR (Utp12 domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L422_AUXPR) HSP 1 Score: 115 bits (288), Expect = 1.130e-26 Identity = 70/158 (44.30%), Postives = 96/158 (60.76%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAKASCSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
D + A DELE+ VLR+ H+VR+ P AR RG + +++AL NNS+EVW E A G GE A +RLA+LD GHR+DVRA+A++ D S+ S S K W+ RT C+R+V G+G + F PG+RH+++GTKEG L V D
Sbjct: 327 DEVTAQDELEALPVLRSKHKVRAAALVPGAR------RGGTLGLVLALANNSLEVW--ECA--------GRAGEDAAPPARLALLDAGGHRADVRALALAGDDSVAVSASTAGVKVWNPRTGSCLRTVEAGYGTALLFVPGNRHVVLGTKEGQLAVVD 468
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A2P6U020_CHLSO (WD repeat-containing 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U020_CHLSO) HSP 1 Score: 115 bits (288), Expect = 1.140e-26 Identity = 71/168 (42.26%), Postives = 93/168 (55.36%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLV-ALHNNSMEVWGV-ESATAAASAEQG--------IGGEAKASCSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
D + A DELE +R+ H+ RS P +GR G LV AL NNS+E+W V E AAA E+G + LDL GHRSDVRAVA++SD S+ S S+ K W+ RT C+R++ G+GL FAPG+RH LVGTKEG +++ D
Sbjct: 353 DHIQASDELELLAAVRSKHKARSVAVCPPGAAGRRAGAGGHVASLVLALTNNSLELWDVAEGGAAAADGEEGEXXXXXXXXXXXXXXXAEKAQTLDLAGHRSDVRAVALASDDSLALSASNNCVKVWNPRTGACLRTMDSGYGLCALFAPGNRHALVGTKEGTIEIFD 520
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A168KM37_ABSGL (Utp12 domain-containing protein n=2 Tax=Absidia TaxID=4828 RepID=A0A168KM37_ABSGL) HSP 1 Score: 114 bits (285), Expect = 2.880e-26 Identity = 64/152 (42.11%), Postives = 95/152 (62.50%), Query Frame = 1
Query: 61 DELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAKASCSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
DE++S+V++R +V SFDFAP + ++ ++LV+L NN +EV+ A + E ++L +DLQGHRSDVR +A+SSD ++AS S L K W+ +TR C+RS+ CG+ L AF PGDRH+L+GTK G L++ D
Sbjct: 356 DEIKSQVIVRTQAKVGSFDFAPV----KDVAKAGHVQILVSLTNNVIEVYN-------APYDVDKKDEDTEDYTKLHYIDLQGHRSDVRTLALSSDDGILASASQNLLKLWNIKTRMCIRSIDCGYALCSAFLPGDRHILLGTKTGELELYD 496
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A1Y2GN87_9FUNG (WD40 repeat-like protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GN87_9FUNG) HSP 1 Score: 114 bits (285), Expect = 2.890e-26 Identity = 68/167 (40.72%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 16 GSTAGESGVDRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAKASCSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
G+TA E D + A DE+ VLR+ + RSFDFAP+ + + +++ +L+NN++EVW V TA + E + E S+ L+L GHRSD+RAVA+SSD ++ S S+G K W+ +T C+R++ CG+ L AF PG+RH++VGTK G+L++ D
Sbjct: 335 GATAEEPVDDTIQATDEITPWHVLRSAAKFRSFDFAPA----KDVQKLGHIQLVASLNNNTVEVWSVPHPTATKNEE--VANEP----SKAYTLELAGHRSDIRAVALSSDDELLCSASNGSLKIWNVKTTSCIRTMDCGYALCCAFLPGNRHVIVGTKTGHLELFD 491
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: S2J3A1_MUCC1 (Utp12 domain-containing protein n=6 Tax=Mucoraceae TaxID=34489 RepID=S2J3A1_MUCC1) HSP 1 Score: 112 bits (280), Expect = 1.350e-25 Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAK--ASCSRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
+ + A DE SE ++R +VRSFDFAP A + +++ +L NN++E + V I E K A SRL +D+ GHRSD+R +A+SSD ++AS S L K W+ +TR C+RS+ CGF L AF PG++H+++GTK G L++ D
Sbjct: 330 NEIEAEDEFTSECLVRTPAKVRSFDFAPVA----DVEKAGEIQIVASLSNNTIEAYTVP-----------ITHEKKEEAEASRLYSIDVPGHRSDIRTLALSSDDELLASASSNLLKVWNMKTRSCIRSIECGFALCSAFLPGNKHIIIGTKTGELELYD 474
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Match: A0A077WSG5_9FUNG (Utp12 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WSG5_9FUNG) HSP 1 Score: 112 bits (279), Expect = 1.840e-25 Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 1
Query: 43 DRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRSRGASTRVLVALHNNSMEVWGVESATAAASAEQGIGGEAKASC----SRLAILDLQGHRSDVRAVAISSDASMVASVSHGLAKTWSSRTRQCVRSVPCGFGLTVAFAPGDRHLLVGTKEGNLQVDD 516
D ++A D S +++RA +VRSFDF P + +VL++L +N +EV+ + + KA SR A LD+ GHRSD+RAVA+SSD ++AS S+GL K W+ +TR C+RS+ CG+ L AF PG+RH+LVGTK G L++ D
Sbjct: 324 DDILAEDLYHSYMIVRAPTKVRSFDFPPK----NDYEKKGHLQVLLSLSDNVIEVYNAP-----------LPADKKADPTLEPSRQASLDMHGHRSDIRAVALSSDDEVLASASNGLLKIWNVKTRSCIRSIECGYALCCAFLPGNRHVLVGTKAGMLELYD 470 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124189.1818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124189.1818.1 >prot_H-elongata_contig124189.1818.1 ID=prot_H-elongata_contig124189.1818.1|Name=mRNA_H-elongata_contig124189.1818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp MAARGGSTAGESGVDRLIAGDELESEVVLRADHRVRSFDFAPSARSGRSRback to top mRNA from alignment at H-elongata_contig124189:1330..1884+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124189.1818.1 ID=mRNA_H-elongata_contig124189.1818.1|Name=mRNA_H-elongata_contig124189.1818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig124189:1330..1884+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124189:1330..1884+ >mRNA_H-elongata_contig124189.1818.1 ID=mRNA_H-elongata_contig124189.1818.1|Name=mRNA_H-elongata_contig124189.1818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig124189:1330..1884+ (Himanthalia elongata Himel1 dioecious)back to top |