mRNA_H-elongata_contig124152.1816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124152.1816.1
Unique NamemRNA_H-elongata_contig124152.1816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124152.1816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124152contigH-elongata_contig124152:511..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size416
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124152.1816.1prot_H-elongata_contig124152.1816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124152 561..923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.1110368-UTR-H-elongata_contig124152:510..5601622929731.1110368-UTR-H-elongata_contig124152:510..560Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124152 511..560 +
1691679136.2829218-UTR-H-elongata_contig124152:510..5601691679136.2829218-UTR-H-elongata_contig124152:510..560Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124152 511..560 +
1622929731.151432-UTR-H-elongata_contig124152:923..9261622929731.151432-UTR-H-elongata_contig124152:923..926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124152 924..926 +
1691679136.2975922-UTR-H-elongata_contig124152:923..9261691679136.2975922-UTR-H-elongata_contig124152:923..926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124152 924..926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.1341767-CDS-H-elongata_contig124152:560..9231622929731.1341767-CDS-H-elongata_contig124152:560..923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124152 561..923 +
1691679136.2900054-CDS-H-elongata_contig124152:560..9231691679136.2900054-CDS-H-elongata_contig124152:560..923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124152 561..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124152.1816.1

>prot_H-elongata_contig124152.1816.1 ID=prot_H-elongata_contig124152.1816.1|Name=mRNA_H-elongata_contig124152.1816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MCTLARRWLGFVLLLVPSFLVSARVSVRFTTAAHDGRRDTFLNREDGKHR
PRRLDCQVAMVPTSTVSRGPLESRTGEILSGRLPRARGWTTAVVGLWDYR
HYPRATWRGGCCFRGRGTLL*
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mRNA from alignment at H-elongata_contig124152:511..926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124152.1816.1 ID=mRNA_H-elongata_contig124152.1816.1|Name=mRNA_H-elongata_contig124152.1816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=416bp|location=Sequence derived from alignment at H-elongata_contig124152:511..926+ (Himanthalia elongata Himel1 dioecious)
CGACGAGCCTTATTTCATGTTTGTGTCATGCATGAAAGGCCTCGTATGTT
ATGTGCACTTTAGCGCGAAGATGGCTGGGTTTTGTGCTCCTTCTGGTGCC
AAGTTTCCTAGTTTCGGCGCGCGTGAGCGTGAGGTTCACGACAGCTGCGC
ACGATGGCCGTCGAGACACATTCTTGAATCGGGAGGACGGGAAGCATCGG
CCTCGGCGTCTTGATTGTCAAGTGGCGATGGTCCCCACCAGCACAGTGAG
CAGAGGCCCACTCGAGTCCAGAACGGGCGAGATATTAAGTGGGCGGTTGC
CTAGAGCGAGAGGATGGACTACGGCGGTCGTCGGTTTATGGGACTACAGG
CATTATCCGCGGGCGACTTGGCGAGGAGGATGTTGCTTTCGAGGTCGCGG
TACTCTGCTGTGAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig124152:511..926+

>mRNA_H-elongata_contig124152.1816.1 ID=mRNA_H-elongata_contig124152.1816.1|Name=mRNA_H-elongata_contig124152.1816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig124152:511..926+ (Himanthalia elongata Himel1 dioecious)
ATGTGCACTTTAGCGCGAAGATGGCTGGGTTTTGTGCTCCTTCTGGTGCC
AAGTTTCCTAGTTTCGGCGCGCGTGAGCGTGAGGTTCACGACAGCTGCGC
ACGATGGCCGTCGAGACACATTCTTGAATCGGGAGGACGGGAAGCATCGG
CCTCGGCGTCTTGATTGTCAAGTGGCGATGGTCCCCACCAGCACAGTGAG
CAGAGGCCCACTCGAGTCCAGAACGGGCGAGATATTAAGTGGGCGGTTGC
CTAGAGCGAGAGGATGGACTACGGCGGTCGTCGGTTTATGGGACTACAGG
CATTATCCGCGGGCGACTTGGCGAGGAGGATGTTGCTTTCGAGGTCGCGG
TACTCTGCTGTGAATGTGCACTTTAGCGCGAAGATGGCTGGGTTTTGTGC
TCCTTCTGGTGCCAAGTTTCCTAGTTTCGGCGCGCGTGAGCGTGAGGTTC
ACGACAGCTGCGCACGATGGCCGTCGAGACACATTCTTGAATCGGGAGGA
CGGGAAGCATCGGCCTCGGCGTCTTGATTGTCAAGTGGCGATGGTCCCCA
CCAGCACAGTGAGCAGAGGCCCACTCGAGTCCAGAACGGGCGAGATATTA
AGTGGGCGGTTGCCTAGAGCGAGAGGATGGACTACGGCGGTCGTCGGTTT
ATGGGACTACAGGCATTATCCGCGGGCGACTTGGCGAGGAGGATGTTGCT
TTCGAGGTCGCGGTACTCTGCTGTGA
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