mRNA_H-elongata_contig124144.1815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124144.1815.1
Unique NamemRNA_H-elongata_contig124144.1815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.680e-29
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 CVPITPVETSWSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
            CVPI+PV+T+W       +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:  168 CVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 240
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.300e-28
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 CVPITPVETSWSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
            CVPI+PV+T+W       +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:  342 CVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 414
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.870e-28
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 CVPITPVETSWSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
            CVPI+PV+T+W       +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:   59 CVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 131
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.540e-28
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 CVPITPVETSWSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
            CVPI+PV+T+W       +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct: 1473 CVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 1545
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.130e-25
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   52 HEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
             +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:    8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 69
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.270e-25
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   52 HEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
             +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 67
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.710e-25
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   31 WSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
            WS   +D  GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:   67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 133
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-24
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   52 HEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
             +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 67
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.140e-24
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   52 HEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
             +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:    3 QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVE 64
[Close]
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.320e-23
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   52 HEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAVIDLGKNESCTGLTFVCLSRGKKLTGLLIE 237
             +GG   RTQLPL LCWAITMHKSQGQTL+ AVIDLG  E+CTGLTFVCLSR K+L  L++E
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124144.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE2.680e-2967.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE3.300e-2867.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE3.870e-2867.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE8.540e-2867.09ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5KSF1_9PHAE2.130e-2572.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE5.270e-2572.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE5.710e-2569.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.120e-2472.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE2.140e-2472.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.320e-2372.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124144contigH-elongata_contig124144:1008..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score81.6
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog400682.PAC_15699109
EggNOG free text desc.Helicase
EggNOG OGs39K8F@33154,3C3GY@33208,COG0507@1,KOG0987@2759
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.0535176-CDS-H-elongata_contig124144:1007..12441622929731.0535176-CDS-H-elongata_contig124144:1007..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124144 1008..1244 +
1691679136.2740853-CDS-H-elongata_contig124144:1007..12441691679136.2740853-CDS-H-elongata_contig124144:1007..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124144 1008..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124144.1815.1prot_H-elongata_contig124144.1815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124144 1008..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124144.1815.1

>prot_H-elongata_contig124144.1815.1 ID=prot_H-elongata_contig124144.1815.1|Name=mRNA_H-elongata_contig124144.1815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
CVPITPVETSWSAPSQDHEGGAMTRTQLPLMLCWAITMHKSQGQTLSMAV
IDLGKNESCTGLTFVCLSRGKKLTGLLIE
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mRNA from alignment at H-elongata_contig124144:1008..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124144.1815.1 ID=mRNA_H-elongata_contig124144.1815.1|Name=mRNA_H-elongata_contig124144.1815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig124144:1008..1244+ (Himanthalia elongata Himel1 dioecious)
TGTGTTCCAATCACTCCCGTTGAGACCTCCTGGTCGGCACCAAGTCAAGA
TCATGAAGGTGGTGCCATGACCAGAACTCAGCTCCCACTCATGTTATGCT
GGGCTATCACCATGCACAAGAGTCAAGGCCAGACGTTGTCAATGGCCGTG
ATCGATTTGGGGAAAAATGAATCGTGCACTGGATTGACTTTCGTCTGTTT
GAGTCGTGGTAAGAAGTTGACTGGTCTGCTGATAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig124144:1008..1244+

>mRNA_H-elongata_contig124144.1815.1 ID=mRNA_H-elongata_contig124144.1815.1|Name=mRNA_H-elongata_contig124144.1815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig124144:1008..1244+ (Himanthalia elongata Himel1 dioecious)
TGTGTTCCAATCACTCCCGTTGAGACCTCCTGGTCGGCACCAAGTCAAGA
TCATGAAGGTGGTGCCATGACCAGAACTCAGCTCCCACTCATGTTATGCT
GGGCTATCACCATGCACAAGAGTCAAGGCCAGACGTTGTCAATGGCCGTG
ATCGATTTGGGGAAAAATGAATCGTGCACTGGATTGACTTTCGTCTGTTT
GAGTCGTGGTAAGAAGTTGACTGGTCTGCTGATAGAATGTGTTCCAATCA
CTCCCGTTGAGACCTCCTGGTCGGCACCAAGTCAAGATCATGAAGGTGGT
GCCATGACCAGAACTCAGCTCCCACTCATGTTATGCTGGGCTATCACCAT
GCACAAGAGTCAAGGCCAGACGTTGTCAATGGCCGTGATCGATTTGGGGA
AAAATGAATCGTGCACTGGATTGACTTTCGTCTGTTTGAGTCGTGGTAAG
AAGTTGACTGGTCTGCTGATAGAA
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