mRNA_H-elongata_contig124134.1814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig124134.1814.1
Unique Name	mRNA_H-elongata_contig124134.1814.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.490e-63
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 1

Query:    1 TSLDKHGANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
             S +K  +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRK V AMD+VYALKRQGRTLYGFGG
Sbjct:   14 VSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 194 bits (494), Expect = 1.520e-62
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 1

Query:   13 KHGANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            +H  NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:    3 QHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.460e-62
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1

Query:   28 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRK V AMD+VYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A1G4M1Q1_ANAPH (Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phagocytophilum TaxID=948 RepID=A0A1G4M1Q1_ANAPH)

HSP 1 Score: 195 bits (495), Expect = 2.730e-62
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1

Query:   22 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:   35 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 139

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 193 bits (491), Expect = 3.500e-62
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1

Query:   28 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRK V AMD+VYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: G3UKU6_LOXAF (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXAF)

HSP 1 Score: 193 bits (491), Expect = 3.610e-62
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1

Query:   25 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:    1 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A0B6YRU8_9EUPU (Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 193 bits (491), Expect = 3.850e-62
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1

Query:   25 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:    3 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A1D1YKZ1_9ARAE (Histone H4 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YKZ1_9ARAE)

HSP 1 Score: 194 bits (493), Expect = 4.250e-62
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 1

Query:   19 GANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            GA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRK V AMD+VYALKRQGRTLYGFGG
Sbjct:   26 GAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

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BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A6P6HBW6_PUMCO (Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A6P6HBW6_PUMCO)

HSP 1 Score: 193 bits (491), Expect = 4.370e-62
Identity = 99/110 (90.00%), Postives = 106/110 (96.36%), Query Frame = 1

Query:    7 LDKHGANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            +++  A+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:    1 MNRKTASMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

[Close]

BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Match: A0A4D9E5P1_9SAUR (Histone H4 n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9E5P1_9SAUR)

HSP 1 Score: 195 bits (495), Expect = 4.740e-62
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1

Query:   22 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYGFGG 336
            ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RK V AMD+VYALKRQGRTLYGFGG
Sbjct:   52 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 156

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot

BLAST of mRNA_H-elongata_contig124134.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3L6V663_9STRA	1.490e-63	91.96	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
W5QFN7_SHEEP	1.520e-62	92.59	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q...	[more]
A0A024G0M5_9STRA	2.460e-62	97.09	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
A0A1G4M1Q1_ANAPH	2.730e-62	95.24	Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phago...	[more]
H4_SOLLC	3.500e-62	96.12	Histone H4 n=13 Tax=cellular organisms TaxID=13156...	[more]
G3UKU6_LOXAF	3.610e-62	95.19	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3U...	[more]
A0A0B6YRU8_9EUPU	3.850e-62	95.19	Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=3321...	[more]
A0A1D1YKZ1_9ARAE	4.250e-62	94.34	Histone H4 (Fragment) n=1 Tax=Anthurium amnicola T...	[more]
A0A6P6HBW6_PUMCO	4.370e-62	90.00	Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID...	[more]
A0A4D9E5P1_9SAUR	4.740e-62	95.24	Histone H4 n=1 Tax=Platysternon megacephalum TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig124134	contig	H-elongata_contig124134:120..458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	193.7
Seed ortholog evalue	4.2e-47
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Hectar predicted targeting category	other localisation
Exons	1
Model size	339
Cds size	312
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929731.0064437-UTR-H-elongata_contig124134:119..146	1622929731.0064437-UTR-H-elongata_contig124134:119..146	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124134 120..146 +
1691679136.2469814-UTR-H-elongata_contig124134:119..146	1691679136.2469814-UTR-H-elongata_contig124134:119..146	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig124134 120..146 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929731.0180662-CDS-H-elongata_contig124134:146..458	1622929731.0180662-CDS-H-elongata_contig124134:146..458	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig124134 147..458 +
1691679136.2650144-CDS-H-elongata_contig124134:146..458	1691679136.2650144-CDS-H-elongata_contig124134:146..458	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig124134 147..458 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig124134.1814.1	prot_H-elongata_contig124134.1814.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig124134 147..458 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig124134:120..458+
coding sequence from alignment at H-elongata_contig124134:120..458+

protein sequence of mRNA_H-elongata_contig124134.1814.1

>prot_H-elongata_contig124134.1814.1 ID=prot_H-elongata_contig124134.1814.1|Name=mRNA_H-elongata_contig124134.1814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKAVMAMDMVYALKRQGRTLYG
FGG*

mRNA from alignment at H-elongata_contig124134:120..458+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig124134.1814.1 ID=mRNA_H-elongata_contig124134.1814.1|Name=mRNA_H-elongata_contig124134.1814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig124134:120..458+ (Himanthalia elongata Himel1 dioecious)
ACTTCATTAGACAAGCACGGAGCAAACATGTCAGGACGCGGAAAGGGAGG
CAAAGGTCTAGGCAAGGGTGGGGCTAAGCGCCACCGCAAGGTTCTTCGTG
ATAATATCCAGGGTATCACAAAGCCCGCGATCCGCCGTCTGGCTCGCCGT
GGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAAGAGACCCGCGGAGT
ACTCAAGGTGTTCTTGGAGAACGTAATCCGCGACTCGGTCACGTACACAG
AGCACGCCCGTCGCAAGGCCGTTATGGCCATGGATATGGTTTACGCCCTC
AAGCGCCAGGGCCGTACCCTCTATGGTTTTGGTGGCTAA

Coding sequence (CDS) from alignment at H-elongata_contig124134:120..458+

>mRNA_H-elongata_contig124134.1814.1 ID=mRNA_H-elongata_contig124134.1814.1|Name=mRNA_H-elongata_contig124134.1814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig124134:120..458+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGACGCGGAAAGGGAGGCAAAGGTCTAGGCAAGGGTGGGGCTAA
GCGCCACCGCAAGGTTCTTCGTGATAATATCCAGGGTATCACAAAGCCCG
CGATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGTCTC
ATCTACGAAGAGACCCGCGGAGTACTCAAGGTGTTCTTGGAGAACGTAAT
CCGCGACTCGGTCACGTACACAGAGCACGCCCGTCGCAAGGCCGTTATGG
CCATGGATATGGTTTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGT
TTTGGTGGCTAAATGTCAGGACGCGGAAAGGGAGGCAAAGGTCTAGGCAA
GGGTGGGGCTAAGCGCCACCGCAAGGTTCTTCGTGATAATATCCAGGGTA
TCACAAAGCCCGCGATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGC
ATCTCTGGTCTCATCTACGAAGAGACCCGCGGAGTACTCAAGGTGTTCTT
GGAGAACGTAATCCGCGACTCGGTCACGTACACAGAGCACGCCCGTCGCA
AGGCCGTTATGGCCATGGATATGGTTTACGCCCTCAAGCGCCAGGGCCGT
ACCCTCTATGGTTTTGGTGGCTAA