mRNA_H-elongata_contig124117.1813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124117.1813.1
Unique NamemRNA_H-elongata_contig124117.1813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A6H5JR39_9PHAE (ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR39_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.210e-43
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 1
Query:   22 RVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRILAEK 279
            RV+GN +PFGG+QLVLCGDFFQLPPVGIGRGSTRFCFEA TWDTS+DQSI+LKQVFRQKDP FL ILHEMREGRVS +A+++LA+K
Sbjct:  299 RVKGNGQPFGGIQLVLCGDFFQLPPVGIGRGSTRFCFEARTWDTSIDQSIVLKQVFRQKDPFFLKILHEMREGRVSSEAEQVLADK 384          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A0D2AM31_9PEZI (ATP-dependent DNA helicase PIF1 n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2AM31_9PEZI)

HSP 1 Score: 106 bits (265), Expect = 7.600e-25
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
            +R N +PFGG+QLV+ GDFFQLPPV  G  + RF FEA TW TS+D +I L  VFRQKDP+F  +L+EMREGR+ P++
Sbjct:  770 LRNNGRPFGGIQLVITGDFFQLPPVPEGNRAARFAFEAATWSTSIDHTIALHHVFRQKDPVFAGMLNEMREGRLRPES 847          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A507FMG7_9FUNG (ATP-dependent DNA helicase PIF1 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMG7_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 2.540e-24
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSP 252
            VR +P+PFGG+QLV+CGDF QLPPV   RG + F FEA +W + + ++ILLK+VFRQKDP+F+ IL+EMR G V+P
Sbjct:  372 VRDSPRPFGGIQLVICGDFMQLPPVS--RGESHFAFEAKSWKSCMSRTILLKEVFRQKDPVFVQILNEMRNGLVTP 445          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: C5FMN5_ARTOC (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FMN5_ARTOC)

HSP 1 Score: 104 bits (260), Expect = 3.540e-24
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
            K   L  ++RGN +PFGG+QLV  GDFFQLPPV  G    +F F A TW+TS+  +ILL QVFRQKDP F ++L+EMR GR+SP A
Sbjct:  377 KLEELARKIRGNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAATWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSA 462          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A5N5DV80_9PEZI (ATP-dependent DNA helicase n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5DV80_9PEZI)

HSP 1 Score: 103 bits (258), Expect = 4.270e-24
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPV--GIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSP 252
            VR N KPFGG+QLVL GDFFQLPPV  G   GS RFCFEA +W T+++ +I L Q++RQKDP F  +L+EMREG V+P
Sbjct:  110 VRRNNKPFGGIQLVLTGDFFQLPPVLEGPDDGSPRFCFEAESWKTAIEHTIGLTQIYRQKDPAFAGMLNEMREGLVTP 187          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: UPI000711D652 (ATP-dependent DNA helicase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711D652)

HSP 1 Score: 104 bits (259), Expect = 4.880e-24
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRILAE 276
            +RGN  PFGG+Q+VLCGDFFQLPPVG+GR   +FCFE+  W+  +++ +++  VFRQKD     +L E+R GR+SPQ+ + + E
Sbjct:  210 IRGNDYPFGGIQIVLCGDFFQLPPVGLGRNGVQFCFESRWWNIVVEKVLVMTTVFRQKDMQLQQLLREIRYGRLSPQSMKTMKE 293          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: E4V3W1_ARTGP (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E4V3W1_ARTGP)

HSP 1 Score: 103 bits (256), Expect = 1.230e-23
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
            K   L  ++R N +PFGG+QLV  GDFFQLPPV  G    +F F A TW+TS+  +ILL QVFRQKDP F ++L+EMR GR+SP A
Sbjct:  376 KLEELARKIRNNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAGTWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSA 461          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A0G2G6N1_9EURO (ATP-dependent DNA helicase PIF1 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2G6N1_9EURO)

HSP 1 Score: 102 bits (255), Expect = 1.670e-23
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQA 258
            ++ N +PFGG+Q+V+ GDFFQLPPV     + RFCF+A TW T++  +ILL  VFRQKDP+F S+L+EMR G+++PQ+
Sbjct:  365 IKNNGRPFGGIQVVVTGDFFQLPPVQESNKAVRFCFDAQTWPTTIQHTILLTHVFRQKDPVFASMLNEMRLGKLTPQS 442          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A7S0Q3F8_9EUKA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3F8_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 1.780e-23
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRIL 270
            VR N KPFGG+QLVLCGDFFQLPPV  G  S +F FEA  W+  +  +  L QVFRQ DP F+  L ++R GR  P    +L
Sbjct:   25 VRNNQKPFGGLQLVLCGDFFQLPPVAKGGASYKFAFEAKAWNNCVTTTFELNQVFRQSDPEFIGALQQIRLGRCPPHVAALL 106          
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Match: A0A1B9IG44_9TREE (ATP-dependent DNA helicase PIF1 n=2 Tax=Kwoniella mangrovensis TaxID=463800 RepID=A0A1B9IG44_9TREE)

HSP 1 Score: 102 bits (253), Expect = 3.100e-23
Identity = 42/80 (52.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   25 VRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWDTSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQR 264
            +R NPKP+GG+Q+V+ GDFFQLPPV  G    +FCFEA+ W+ ++  S+ L +VFRQKDP F+ +L+EMR G+++PQ+ +
Sbjct:  375 IRKNPKPWGGIQIVVTGDFFQLPPVTKGNSMPKFCFEADMWNETIHMSVNLSKVFRQKDPRFIDMLNEMRFGKLTPQSNQ 454          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124117.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR39_9PHAE7.210e-4382.56ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxI... [more]
A0A0D2AM31_9PEZI7.600e-2560.26ATP-dependent DNA helicase PIF1 n=1 Tax=Verruconis... [more]
A0A507FMG7_9FUNG2.540e-2460.53ATP-dependent DNA helicase PIF1 n=1 Tax=Chytriomyc... [more]
C5FMN5_ARTOC3.540e-2458.14ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderm... [more]
A0A5N5DV80_9PEZI4.270e-2462.82ATP-dependent DNA helicase n=1 Tax=Lasiodiplodia t... [more]
UPI000711D6524.880e-2451.19ATP-dependent DNA helicase n=1 Tax=Blastocystis sp... [more]
E4V3W1_ARTGP1.230e-2356.98ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderm... [more]
A0A0G2G6N1_9EURO1.670e-2355.13ATP-dependent DNA helicase PIF1 n=1 Tax=Phaeomonie... [more]
A0A7S0Q3F8_9EUKA1.780e-2353.66ATP-dependent DNA helicase (Fragment) n=1 Tax=Cocc... [more]
A0A1B9IG44_9TREE3.100e-2352.50ATP-dependent DNA helicase PIF1 n=2 Tax=Kwoniella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124117contigH-elongata_contig124117:823..1788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D7G380
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.924095-CDS-H-elongata_contig124117:822..9181622929730.924095-CDS-H-elongata_contig124117:822..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124117 823..918 -
1691679136.2133882-CDS-H-elongata_contig124117:822..9181691679136.2133882-CDS-H-elongata_contig124117:822..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124117 823..918 -
1622929730.9470992-CDS-H-elongata_contig124117:1605..17881622929730.9470992-CDS-H-elongata_contig124117:1605..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124117 1606..1788 -
1691679136.2260904-CDS-H-elongata_contig124117:1605..17881691679136.2260904-CDS-H-elongata_contig124117:1605..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124117 1606..1788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124117.1813.1prot_H-elongata_contig124117.1813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124117 823..1788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124117.1813.1

>prot_H-elongata_contig124117.1813.1 ID=prot_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
KSPFLRCRVRGNPKPFGGVQLVLCGDFFQLPPVGIGRGSTRFCFEANTWD
TSLDQSILLKQVFRQKDPLFLSILHEMREGRVSPQAQRILAEK
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mRNA from alignment at H-elongata_contig124117:823..1788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124117.1813.1 ID=mRNA_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=966bp|location=Sequence derived from alignment at H-elongata_contig124117:823..1788- (Himanthalia elongata Himel1 dioecious)
AAATCCCCTTTCTTACGTTGTAGGGTGCGGGGTAATCCCAAGCCGTTCGG AGGCGTCCAGCTGGTGCTGTGCGGGGATTTCTTTCAGCTTCCCCCGGTGG GGATCGGCCGCGGATCAACCCGGTTTTGCTTCGAGGCCAATACCTGGGAC ACGTCGCTAGACCAGTCGATCTTGCTTAAGCAGGTATCGTACTTTGCTAA TAATAATACGACACACCCTTCCCTAAACAATCCGTAAACAAATTAATTGG ATAAGAAAAAGTGTAATAAAGAATTGAGCCGATATCACAGCGCCGTTGGG TTTCCAATGGGGGGATGGGAATAATGACGAGGTTTCATGCCCCTATCACC CAATTTGCCGATCGCACCTTCTCTTTAAGAGGGAGAAAAGGGAGGGAGCG GGGCGGGGCTGATGAAAACGTCGCCCGTAACACAACCGCCTTCTGGCTTG TTGAGGAGGATTAATTTCCTTTATTTTTTGTTGACCATTCTGATGGTAAC TACAATAACTCGGAAAGTATATTTCTGGAACAGTTTTGTTTCTGTTTTTT AAACATATCTTTTTCATGCCCCATTGAAGGTCGATTAGCAGCGCATCGTT CCGAATAAATAAATTGGAGGTAGTGGAGTTGTAGAGAGTGGAGGCGGTGG CGGGTGCGATGCGGCTCCGAGCACGTATATATGTGATGTTGGTTCTATGG TTGTTAGCAAATCATGATATTATCAGCTTTGATATCGACCACAATCTTTG CTTAGTATTCCTCTCTTTTAACCTAACACCAACTTTTAAAACCCGCCTCC TTTTTTTTTTGGGGCCCCCGCTCTGTCCCCCCCCCCCCCCCCCCCTTCCC CTTATACTAACGTTTGACAGGTTTTCCGGCAGAAGGATCCGTTATTCCTT AGCATCCTGCACGAGATGAGAGAGGGGAGAGTCAGCCCACAAGCACAGCG CATCCTGGCTGAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig124117:823..1788-

>mRNA_H-elongata_contig124117.1813.1 ID=mRNA_H-elongata_contig124117.1813.1|Name=mRNA_H-elongata_contig124117.1813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig124117:823..1788- (Himanthalia elongata Himel1 dioecious)
AAATCCCCTTTCTTACGTTGTAGGGTGCGGGGTAATCCCAAGCCGTTCGG
AGGCGTCCAGCTGGTGCTGTGCGGGGATTTCTTTCAGCTTCCCCCGGTGG
GGATCGGCCGCGGATCAACCCGGTTTTGCTTCGAGGCCAATACCTGGGAC
ACGTCGCTAGACCAGTCGATCTTGCTTAAGCAGAAATCCCCTTTCTTACG
TTGTAGGGTGCGGGGTAATCCCAAGCCGTTCGGAGGCGTCCAGCTGGTGC
TGTGCGGGGATTTCTTTCAGCTTCCCCCGGTGGGGATCGGCCGCGGATCA
ACCCGGTTTTGCTTCGAGGCCAATACCTGGGACACGTCGCTAGACCAGTC
GATCTTGCTTAAGCAGGTTTTCCGGCAGAAGGATCCGTTATTCCTTAGCA
TCCTGCACGAGATGAGAGAGGGGAGAGTCAGCCCACAAGCACAGCGCATC
CTGGCTGAAAAGGTTTTCCGGCAGAAGGATCCGTTATTCCTTAGCATCCT
GCACGAGATGAGAGAGGGGAGAGTCAGCCCACAAGCACAGCGCATCCTGG
CTGAAAAG
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