mRNA_H-elongata_contig124096.1811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124096.1811.1
Unique NamemRNA_H-elongata_contig124096.1811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124096.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124096contigH-elongata_contig124096:1145..1509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001350.1
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.8114185-CDS-H-elongata_contig124096:1144..15071622929730.8114185-CDS-H-elongata_contig124096:1144..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124096 1145..1507 +
1691679136.185876-CDS-H-elongata_contig124096:1144..15071691679136.185876-CDS-H-elongata_contig124096:1144..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124096 1145..1507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124096.1811.1prot_H-elongata_contig124096.1811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124096 1145..1507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124096.1811.1

>prot_H-elongata_contig124096.1811.1 ID=prot_H-elongata_contig124096.1811.1|Name=mRNA_H-elongata_contig124096.1811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
NKQQDERPARRSLPRDPLQNNTIENTPTSTAVDQNTSVASPDTMTSTLNT
SNTSSEAWRRAVRAGVINVKSPSGLSPRPSLPARKLDLSANISACESPRW
SIGGRFVPQGKQKCGEKDFVE
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mRNA from alignment at H-elongata_contig124096:1145..1509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124096.1811.1 ID=mRNA_H-elongata_contig124096.1811.1|Name=mRNA_H-elongata_contig124096.1811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=365bp|location=Sequence derived from alignment at H-elongata_contig124096:1145..1509+ (Himanthalia elongata Himel1 dioecious)
AACAAACAGCAGGATGAGCGCCCCGCAAGGCGTTCACTTCCACGCGATCC
CCTTCAAAACAACACTATCGAAAACACCCCCACAAGCACCGCAGTCGACC
AAAACACCAGCGTCGCTTCACCCGACACGATGACGTCGACCCTTAACACA
TCGAATACTTCTTCCGAGGCCTGGCGGCGGGCGGTGCGGGCCGGCGTCAT
CAACGTGAAATCACCATCGGGGTTGAGCCCACGCCCGAGCCTGCCGGCGA
GAAAGTTAGACTTATCTGCTAACATAAGTGCGTGTGAAAGTCCCCGGTGG
AGCATCGGTGGTCGTTTTGTCCCGCAAGGGAAACAAAAGTGCGGTGAGAA
GGATTTCGTAGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig124096:1145..1509+

>mRNA_H-elongata_contig124096.1811.1 ID=mRNA_H-elongata_contig124096.1811.1|Name=mRNA_H-elongata_contig124096.1811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig124096:1145..1509+ (Himanthalia elongata Himel1 dioecious)
AACAAACAGCAGGATGAGCGCCCCGCAAGGCGTTCACTTCCACGCGATCC
CCTTCAAAACAACACTATCGAAAACACCCCCACAAGCACCGCAGTCGACC
AAAACACCAGCGTCGCTTCACCCGACACGATGACGTCGACCCTTAACACA
TCGAATACTTCTTCCGAGGCCTGGCGGCGGGCGGTGCGGGCCGGCGTCAT
CAACGTGAAATCACCATCGGGGTTGAGCCCACGCCCGAGCCTGCCGGCGA
GAAAGTTAGACTTATCTGCTAACATAAGTGCGTGTGAAAGTCCCCGGTGG
AGCATCGGTGGTCGTTTTGTCCCGCAAGGGAAACAAAAGTGCGGTGAGAA
GGATTTCGTAGAGAACAAACAGCAGGATGAGCGCCCCGCAAGGCGTTCAC
TTCCACGCGATCCCCTTCAAAACAACACTATCGAAAACACCCCCACAAGC
ACCGCAGTCGACCAAAACACCAGCGTCGCTTCACCCGACACGATGACGTC
GACCCTTAACACATCGAATACTTCTTCCGAGGCCTGGCGGCGGGCGGTGC
GGGCCGGCGTCATCAACGTGAAATCACCATCGGGGTTGAGCCCACGCCCG
AGCCTGCCGGCGAGAAAGTTAGACTTATCTGCTAACATAAGTGCGTGTGA
AAGTCCCCGGTGGAGCATCGGTGGTCGTTTTGTCCCGCAAGGGAAACAAA
AGTGCGGTGAGAAGGATTTCGTAGAG
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