mRNA_H-elongata_contig124056.1810.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.410e-70 Identity = 114/174 (65.52%), Postives = 136/174 (78.16%), Query Frame = 1
Query: 1 FAVIFAASTLLLLSSPTVDARKNS-----QFTIYERQSDDGPRHSPLFTLPVG-GEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVK 504
F V + + LLL TV+A + +FT++ERQSDDGPRHSPLFTLPV E+ E+PSKMVLFNNDLYGS+D LI+E D ++GYNQGHCVETVA+ GF AEC+FTYVFD GSLTANGPFNF+A+ G V+ S LAVTGGTG+Y GA G V +SAGPAE+F SLQFDF +K
Sbjct: 4 FIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAEDG-VLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI) HSP 1 Score: 171 bits (434), Expect = 2.760e-52 Identity = 83/114 (72.81%), Postives = 97/114 (85.09%), Query Frame = 1
Query: 172 MVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVKNSS 513
MVLFNNDLYGS+D LI+ED +E+IGYNQGHCVETVA+ GF AEC+FTYVFD GSLTANGPFNF+ + G V+ S LAVTGGTG+Y GA+G V +SAGPAE+F SLQFDF +K S
Sbjct: 1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDG-VLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLKRKS 113
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A5J6MIQ6_9PROT (Allene-oxide cyclase n=2 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MIQ6_9PROT) HSP 1 Score: 68.6 bits (166), Expect = 1.780e-11 Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 1
Query: 1 FAVIFAASTLLLLSSPTVDARKNSQFTIYERQSDDGPRHSPLFTLPVGGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVK 504
FA+I A+ L+ SS A + T ER + D + G +G+ ++ F N++Y +E +++G++ G C+ TV G ECY+T + G L+ GP+ D+G+ SVLAVTGGTG Y GA+GE+ L A A+ ++DF K
Sbjct: 11 FALIALAA--LIGSSRPASAFQTESATYVERATTDA--------VTDLGAKGDSVGDLLTFANEIY-------DEHNKKLVGHDNGWCIRTVV--GAAWECYWTLELEDGQLSVAGPY---LDAGD---SVLAVTGGTGRYYGARGEMKLHARNAQ---GSEYDFMYK 150
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A536NCQ6_9CHLR (Allene oxide cyclase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536NCQ6_9CHLR) HSP 1 Score: 67.8 bits (164), Expect = 3.720e-11 Identity = 53/176 (30.11%), Postives = 81/176 (46.02%), Query Frame = 1
Query: 1 FAVIFAASTLLLLSSPTVDARKNS----QFTIYERQSDDGPRHSPLFTLPVGGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVKNSSG 516
F V+ A + L+++ TV A + T+ ER D T+ G G+ ++ F N +Y + + +G +QG C+ T G EC +T + GGSLT GPFN N + LA+TGGTG Y A+G++TL A A+ ++DF + G
Sbjct: 6 FGVLGAGALLVIVLGSTVVAADGPGGGHRLTVVERAETD--------TVVDLGATGDSIGDLLAFGNPIYDASN-------THQVGRDQGSCIRT--NPGVSWECTWTTIVPGGSLTVEGPFNDNGSD-----TQLAITGGTGTYRNARGQMTLHARNAQ---GSEYDFRFQTIGG 156
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A5J6MYX8_9PROT (Allene-oxide cyclase n=2 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MYX8_9PROT) HSP 1 Score: 66.2 bits (160), Expect = 8.710e-11 Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 145 GEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVK 504
G++G+ ++ F N++Y +E ++G++ G C+ TV + + EC++T G L+ GP+ ADS VL+VTGGTG Y GA+GE+ L A A+ ++DF K
Sbjct: 29 GDKGDSVGDLLTFANEIY-------DEHNKNLLGHDNGWCIRTVVGKAW--ECFWTLTLADGQLSVAGPYFDAADS------VLSVTGGTGRYYGARGEMKLHARNAQ---GTEYDFAYK 130
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: UPI000485D872 (dirigent protein n=1 Tax=Marmoricola sp. URHB0036 TaxID=1298863 RepID=UPI000485D872) HSP 1 Score: 66.2 bits (160), Expect = 1.460e-10 Identity = 53/159 (33.33%), Postives = 75/159 (47.17%), Query Frame = 1
Query: 34 LLSSPTVDARKNSQFTIYERQSDDGPRHSPLFTLPVGGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVKNS 510
+ SSP D ++ +FT+ ER D + T P G G+ ++ F N ++ +K+ +G + G CV T + EC +T GGSL +GPF + DS LAVTGGTG Y GA GE+ L A A A F F ++ S
Sbjct: 24 MASSP--DHHRHGRFTVVERALTD----TTADTGPAGDSLGD----VLAFANPIFNAKN-------THKVGTDNGSCVRTAVGSAY--ECTWTTSLPGGSLVVSGPFRDHGDS------TLAVTGGTGKYRGASGEMRLHARNAAGSA-YNFTFSLRRS 156
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A370CZI8_9MYCO (Allene-oxide cyclase n=1 Tax=Mycolicibacterium moriokaense TaxID=39691 RepID=A0A370CZI8_9MYCO) HSP 1 Score: 63.9 bits (154), Expect = 1.250e-9 Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 145 GEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSA 456
G +G+ ++ F N+++ ++D +G +QG CV TVA + EC++T G +T GPF DSG+ SVLA+TGGTG Y A+G++ LSA
Sbjct: 61 GAKGDSAGDILTFANEVFDAQDATR-------VGNDQGMCVRTVAGSAW--ECFWTLTLAAGQITVQGPFY---DSGD---SVLAITGGTGAYANAQGDMLLSA 149
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A5C7NDL5_9PROT (Allene-oxide cyclase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NDL5_9PROT) HSP 1 Score: 61.6 bits (148), Expect = 6.920e-9 Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query: 49 TVDARKNSQFTIYERQSDDGPRHSPLFTLPVGGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDF 495
T A+ S + ER + D + G +G+ ++ F N +Y + + ++ IG + G C+ TV + + EC++T G +T GPF D+G+ SVLAVTGGTG Y A+G++TL A D ++DF
Sbjct: 22 TATAQAQSTIAVVERATTDA--------VTDLGAKGDSAGDLLTFANGIYDATN-------EKKIGADNGWCIRTVPGKAW--ECFWTISLPKGQITVEGPFY---DAGD---SVLAVTGGTGSYTQARGQMTLHA---RDDKGSEYDF 144
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A085WNT7_9DELT (Allene-oxide cyclase n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WNT7_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 1.090e-8 Identity = 38/127 (29.92%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 115 HSPLFTLPVGGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDF 495
H+ + G+ ++ F N+LY +E +G NQG+CV VA + + EC +T +GG ++ GPF +V S L++TGGTG++ GA+G++ L + +FDF
Sbjct: 39 HASTDAVTDNSPPGDSVGDVLTFANELY-------DETNTRKVGTNQGYCVRVVAGQAW--ECLWTAFLEGGQISVEGPFY------DVKGSTLSITGGTGNFNGARGQMQLEFRNPQ---GTEFDF 147
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Match: A0A102DG03_9SPHN (Allene-oxide cyclase n=1 Tax=Novosphingobium sp. FSW06-99 TaxID=1739113 RepID=A0A102DG03_9SPHN) HSP 1 Score: 60.8 bits (146), Expect = 1.300e-8 Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 142 GGEEGEFPSKMVLFNNDLYGSKDGLIEEDPDEIIGYNQGHCVETVATEGFFAECYFTYVFDGGSLTANGPFNFNADSGNVVSSVLAVTGGTGDYIGAKGEVTLSAGPAEDFASLQFDFDVK 504
GG E ++ F N +Y + + + +G +QG+CV + G EC++T + G + +GP AD N + LAVTGGTG Y GA+G++ + A D + +DF +
Sbjct: 40 GGSAAENVGDVLTFTNPIYDASNS-------KKVGVDQGYCVRLIV--GKTMECHWTLILAKGQIMVDGPV---ADGDNAPDTTLAVTGGTGAYRGARGDMLIHA---RDAKATAYDFHYR 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124056.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124056.1810.1 >prot_H-elongata_contig124056.1810.1 ID=prot_H-elongata_contig124056.1810.1|Name=mRNA_H-elongata_contig124056.1810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp FAVIFAASTLLLLSSPTVDARKNSQFTIYERQSDDGPRHSPLFTLPVGGEback to top mRNA from alignment at H-elongata_contig124056:333..1934- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124056.1810.1 ID=mRNA_H-elongata_contig124056.1810.1|Name=mRNA_H-elongata_contig124056.1810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1602bp|location=Sequence derived from alignment at H-elongata_contig124056:333..1934- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124056:333..1934- >mRNA_H-elongata_contig124056.1810.1 ID=mRNA_H-elongata_contig124056.1810.1|Name=mRNA_H-elongata_contig124056.1810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig124056:333..1934- (Himanthalia elongata Himel1 dioecious)back to top |