mRNA_H-elongata_contig124050.1809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124050.1809.1
Unique NamemRNA_H-elongata_contig124050.1809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: D7G9I1_ECTSI (Cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.070e-18
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  112 GRWEVSDSRGRRRLFDEVIFACPADTALHLLG----DEEASAEEKDALGRFTFAENVVYVH 282
            GRW V D+RG+ R FDEVIFACPADTAL LLG    + EAS+EE+DAL RF+F++N +YVH
Sbjct:  340 GRWRVVDARGKARFFDEVIFACPADTALALLGGGEGEGEASSEERDALSRFSFSDNTIYVH 400          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: A0A1Y2BNP0_9FUNG (FAD/NAD(P)-binding domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BNP0_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 8.960e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   82 VSSPVAGKARGRWEVSDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVHR 285
            V+S V   A G   V+DS G++ +FD VIFA  +D AL +LGD+ A+AEE+  LG   F  N   +HR
Sbjct:  275 VTSVVRNTAEGTVTVTDSTGKKEVFDHVIFATHSDQALKILGDD-ATAEERQILGSIKFLNNRAVLHR 341          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: A0A7R7GGK7_9ALTE (Dehydrogenase n=2 Tax=unclassified Alteromonas TaxID=2614992 RepID=A0A7R7GGK7_9ALTE)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-6
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  103 KARGRWEVSDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVHR 285
            K  G+W V D++    LFD++IFAC +D ALH++   E S   K  LG   +A N V +H+
Sbjct:  239 KHEGKWRVVDAQNNSALFDDIIFACHSDQALHMIA--EPSDWHKQVLGNIPYANNDVVMHK 297          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: UPI00191B40DC (FAD-dependent oxidoreductase n=1 Tax=Psychrobacter aestuarii TaxID=556327 RepID=UPI00191B40DC)

HSP 1 Score: 54.7 bits (130), Expect = 1.490e-6
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  103 KARGRWEVSDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            K  G+ +   +R +   FDEVIFAC ADTAL LL D  AS +EK+ LG F F  N   +H
Sbjct:  303 KTLGKADEQTTRVQSEDFDEVIFACHADTALRLLAD--ASDDEKEVLGHFYFTPNTAVLH 360          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: UPI002022C17B (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Ancylobacter sp. VKM B-3255 TaxID=2836179 RepID=UPI002022C17B)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-6
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   91 PVAGKARGRW--EVSDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            PVA   RG    EV D  G RR FDEV+ AC AD ALHLL  E  +  E++ LG F ++ N   +H
Sbjct:  234 PVAAIRRGPLGVEVVDRAGERRRFDEVVLACHADQALHLL--EAPTPREREVLGAFRYSVNEAILH 297          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: UPI0015F95B9F (FAD-dependent oxidoreductase n=1 Tax=Psychrobacter sp. GP33 TaxID=2758709 RepID=UPI0015F95B9F)

HSP 1 Score: 53.5 bits (127), Expect = 3.790e-6
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   64 AAGNGEVSSPVAGKARGRWEV-----SDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            A G  +V+SPVA  +R   +V     +D   +  +FDEVIFAC ADTAL LL D  AS +E + L  F F  N   +H
Sbjct:  289 AGGTIKVNSPVATVSRSADKVMVKNKTDGNTQTLIFDEVIFACHADTALRLLAD--ASHDETEILSHFHFTNNTAVLH 364          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: A0A0Q9ZRU1_9GAMM (FAD-dependent oxidoreductase n=20 Tax=Moraxellaceae TaxID=468 RepID=A0A0Q9ZRU1_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 7.080e-6
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  127 SDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            +++R    +FDEVIFAC ADTAL +L D  AS +E + LG F F +N   +H
Sbjct:  308 ANNRSENLVFDEVIFACHADTALKILKD--ASTDESEVLGHFRFTKNTAVLH 357          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: A0A2V4V2Y8_9GAMM (Putative NAD/FAD-binding protein n=7 Tax=Psychrobacter TaxID=497 RepID=A0A2V4V2Y8_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 9.670e-6
Identity = 34/82 (41.46%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   64 AAGNGEVSSPVAGKARGRWEV---------SDSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            A G   V+SPV    R   +V         +D+     +FDEVIFAC ADTAL +L D  AS EE + LG F F +N   +H
Sbjct:  275 AGGKIRVNSPVQSVVRDGEQVLLTVQDKGNADNTLENLVFDEVIFACHADTALKVLKD--ASTEESEVLGHFRFTKNTAVLH 354          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: A0A0M3V9B5_9GAMM (FAD-dependent oxidoreductase n=1 Tax=Psychrobacter urativorans TaxID=45610 RepID=A0A0M3V9B5_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.320e-5
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 1
Query:   64 AAGNGEVSSPVAGKARGRWEVS-------DSRGRRRLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            A G  +V+SPVA   R   +V+       D      +FDEVIFAC ADTA  LL D  AS +E + L  F F  N   +H
Sbjct:  286 AGGTIKVNSPVAAVTRSADKVTLKVMNKTDDNAETLIFDEVIFACHADTAQRLLAD--ASKDETEILSHFQFTNNTAVLH 363          
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Match: U4TAP5_9GAMM (Amine oxidase n=2 Tax=Psychrobacter TaxID=497 RepID=U4TAP5_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 1.800e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  148 RLFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVH 282
            R+FDEVIFAC ADTAL++L D  AS EE + L  F F +N   +H
Sbjct:  314 RVFDEVIFACHADTALNILKD--ASVEETEVLSHFRFTKNTAVLH 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124050.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G9I1_ECTSI9.070e-1865.57Cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
A0A1Y2BNP0_9FUNG8.960e-845.59FAD/NAD(P)-binding domain-containing protein n=1 T... [more]
A0A7R7GGK7_9ALTE1.060e-640.98Dehydrogenase n=2 Tax=unclassified Alteromonas Tax... [more]
UPI00191B40DC1.490e-648.33FAD-dependent oxidoreductase n=1 Tax=Psychrobacter... [more]
UPI002022C17B1.980e-646.97NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Ancylo... [more]
UPI0015F95B9F3.790e-643.59FAD-dependent oxidoreductase n=1 Tax=Psychrobacter... [more]
A0A0Q9ZRU1_9GAMM7.080e-648.08FAD-dependent oxidoreductase n=20 Tax=Moraxellacea... [more]
A0A2V4V2Y8_9GAMM9.670e-641.46Putative NAD/FAD-binding protein n=7 Tax=Psychroba... [more]
A0A0M3V9B5_9GAMM1.320e-541.25FAD-dependent oxidoreductase n=1 Tax=Psychrobacter... [more]
U4TAP5_9GAMM1.800e-555.56Amine oxidase n=2 Tax=Psychrobacter TaxID=497 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124050contigH-elongata_contig124050:499..1210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7G9I1
EggNOG free text desc.lipid biosynthetic process
EggNOG OGs2QSMW@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.6427135-CDS-H-elongata_contig124050:498..6601622929730.6427135-CDS-H-elongata_contig124050:498..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124050 499..660 +
1691679136.1289728-CDS-H-elongata_contig124050:498..6601691679136.1289728-CDS-H-elongata_contig124050:498..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124050 499..660 +
1622929730.6649528-CDS-H-elongata_contig124050:1084..12101622929730.6649528-CDS-H-elongata_contig124050:1084..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124050 1085..1210 +
1691679136.1381748-CDS-H-elongata_contig124050:1084..12101691679136.1381748-CDS-H-elongata_contig124050:1084..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124050 1085..1210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124050.1809.1prot_H-elongata_contig124050.1809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124050 499..1210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124050.1809.1

>prot_H-elongata_contig124050.1809.1 ID=prot_H-elongata_contig124050.1809.1|Name=mRNA_H-elongata_contig124050.1809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
SLHKPKRDDDDAAAGEVPAEAAAGNGEVSSPVAGKARGRWEVSDSRGRRR
LFDEVIFACPADTALHLLGDEEASAEEKDALGRFTFAENVVYVHR*
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mRNA from alignment at H-elongata_contig124050:499..1210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124050.1809.1 ID=mRNA_H-elongata_contig124050.1809.1|Name=mRNA_H-elongata_contig124050.1809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=712bp|location=Sequence derived from alignment at H-elongata_contig124050:499..1210+ (Himanthalia elongata Himel1 dioecious)
TCGCTCCATAAGCCGAAGCGTGATGACGATGATGCCGCCGCTGGGGAGGT TCCCGCAGAGGCGGCGGCCGGGAACGGAGAAGTTTCATCCCCGGTGGCTG GAAAGGCAAGGGGTCGATGGGAAGTCTCGGACAGTCGAGGGAGAAGGAGA CTCTTCGATGAGGTGGGGAAGGAGGAAAATCATGCTCTAAGAAGTATACT TTCGAGAGGAGGCGTTTTCCTCTGATATTCCACTTTAATATGCTGAAGCA CAGTGCTATATTCACGTGTTTTTCTGCCTTTCTACCTTTTGACCACGGAC TGGATTTGGGACATAAGCTTATTATGTGAGAATTAAATCAATACATTAAT CAATACATTAATCGATCAAATACTCGCTCTCCCTCTGTTCTTTTCCAAGA TACGACCGACAGCTCCGTAACGTCTTTGCCCTCGGCTTGATTTTGATTGG CCAATCTCTTAGCAGTGTCGCATCGTTGTGGAGGACATCTTTTTATACTG CAACAATGGGAGATTGAATATCGTCGAATTATACAGTACCCTTCCCGTCC CGTCCCGTCCCCGCCGCCCTCCCCCCCTTAGTATAGGTGATTTTCGCGTG CCCGGCGGACACTGCTCTGCATCTGCTAGGAGACGAGGAGGCATCTGCGG AAGAAAAAGACGCTCTGGGGCGGTTTACCTTCGCAGAAAACGTTGTTTAC GTGCACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig124050:499..1210+

>mRNA_H-elongata_contig124050.1809.1 ID=mRNA_H-elongata_contig124050.1809.1|Name=mRNA_H-elongata_contig124050.1809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig124050:499..1210+ (Himanthalia elongata Himel1 dioecious)
TCGCTCCATAAGCCGAAGCGTGATGACGATGATGCCGCCGCTGGGGAGGT
TCCCGCAGAGGCGGCGGCCGGGAACGGAGAAGTTTCATCCCCGGTGGCTG
GAAAGGCAAGGGGTCGATGGGAAGTCTCGGACAGTCGAGGGAGAAGGAGA
CTCTTCGATGAGTCGCTCCATAAGCCGAAGCGTGATGACGATGATGCCGC
CGCTGGGGAGGTTCCCGCAGAGGCGGCGGCCGGGAACGGAGAAGTTTCAT
CCCCGGTGGCTGGAAAGGCAAGGGGTCGATGGGAAGTCTCGGACAGTCGA
GGGAGAAGGAGACTCTTCGATGAGGTGATTTTCGCGTGCCCGGCGGACAC
TGCTCTGCATCTGCTAGGAGACGAGGAGGCATCTGCGGAAGAAAAAGACG
CTCTGGGGCGGTTTACCTTCGCAGAAAACGTTGTTTACGTGCACAGGTGA
GTGATTTTCGCGTGCCCGGCGGACACTGCTCTGCATCTGCTAGGAGACGA
GGAGGCATCTGCGGAAGAAAAAGACGCTCTGGGGCGGTTTACCTTCGCAG
AAAACGTTGTTTACGTGCACAGGTGA
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