mRNA_H-elongata_contig124038.1808.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124038.1808.1
Unique NamemRNA_H-elongata_contig124038.1808.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig124038.1808.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.150e-47
Identity = 63/93 (67.74%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    1 QECSKSALSEAAQEQLDIYNKDLYLEPDCINGAVPLPVHCNYMGLGQECRGCYMTCEGVIKYMEDFPGEVQTWGVDAIIHFCPTAEVDNYDDC 279
            +EC  S+LS+AAQEQL +Y+KDLYLEPDC+NGA P+PVHCNYMGLGQECRGC+MTC+G  +Y++DF  E+  WGVDAI+HFCP AEV+  ++C
Sbjct:   23 EECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
[Close]
BLAST of mRNA_H-elongata_contig124038.1808.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.250e-28
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    7 CSKSALSEAAQEQLDIYNKDLYLEPDCINGAVPLPVHCNYMGLGQECRGCYMTCEGVIKYMEDFPGEVQTWGVDAIIHFCPTAEVDNYDDC 279
            CS  +L++A Q+QL +Y+ D+YLE DC+N + PLP+ CNYMGLGQECRGC++TC G + Y++D    +  +G DA+I+FCP +EV +  +C
Sbjct:  584 CSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAEC 674
[Close]
BLAST of mRNA_H-elongata_contig124038.1808.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.280e-21
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 QECSKSALSEAAQEQLDIYNKDLYLEPDCINGAVPLPVHCNYMGLGQECRGCYMTCEGVIKYMEDFPGEVQTWGVDAIIHFCPTAEVDNYDDC 279
            Q CS+ +L++  Q+QL++Y  D+YLE DC+N + PLP+ CNYMGLGQECRGC++    V              G DA+I+FCP +EV +  +C
Sbjct:  487 QSCSRDSLNDVDQQQLNLYENDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLALAHVK-------------GEDAVINFCPQSEVSDLAEC 566
[Close]
BLAST of mRNA_H-elongata_contig124038.1808.1 vs. uniprot
Match: A0A6H5KP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP24_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.830e-17
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   52 IYNKDLYLEPDCINGAVPLPVHCNYMGLGQECRGCYMTCE-GVIKYMEDFPGEVQTWGVDAIIHFCPTAE 258
            +Y+K LYLEPDC+NGA P+PVHCNYMGLGQECRGC+M  E  V++            G    + FCP AE
Sbjct:    1 MYDKGLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMDKEIAVVR------------GDRGGMCFCPLAE 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124038.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDU5_ECTSI4.150e-4767.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI2.250e-2850.55N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KWI6_9PHAE8.280e-2145.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP24_9PHAE1.830e-1754.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124038contigH-elongata_contig124038:540..1122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003370.1
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.5848799-CDS-H-elongata_contig124038:539..6021622929730.5848799-CDS-H-elongata_contig124038:539..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124038 540..602 -
1691679136.1079698-CDS-H-elongata_contig124038:539..6021691679136.1079698-CDS-H-elongata_contig124038:539..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124038 540..602 -
1622929730.59972-CDS-H-elongata_contig124038:903..11221622929730.59972-CDS-H-elongata_contig124038:903..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124038 904..1122 -
1691679136.116822-CDS-H-elongata_contig124038:903..11221691679136.116822-CDS-H-elongata_contig124038:903..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124038 904..1122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124038.1808.1prot_H-elongata_contig124038.1808.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124038 540..1122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124038.1808.1

>prot_H-elongata_contig124038.1808.1 ID=prot_H-elongata_contig124038.1808.1|Name=mRNA_H-elongata_contig124038.1808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
QECSKSALSEAAQEQLDIYNKDLYLEPDCINGAVPLPVHCNYMGLGQECR
GCYMTCEGVIKYMEDFPGEVQTWGVDAIIHFCPTAEVDNYDDC*
back to top

mRNA from alignment at H-elongata_contig124038:540..1122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124038.1808.1 ID=mRNA_H-elongata_contig124038.1808.1|Name=mRNA_H-elongata_contig124038.1808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=583bp|location=Sequence derived from alignment at H-elongata_contig124038:540..1122- (Himanthalia elongata Himel1 dioecious)
CAGGAATGCAGCAAGTCAGCTCTCTCGGAGGCCGCCCAGGAGCAGCTCGA
CATATACAACAAAGACCTATACCTTGAGCCCGATTGCATCAATGGCGCAG
TGCCTTTGCCCGTGCACTGCAATTACATGGGCCTCGGGCAGGAGTGCCGC
GGATGCTACATGACCTGCGAAGGAGTAATTAAGTATATGGAAGACTTTCC
GGGAGAGGTTCAAACCTGGGTGAGCTTTGATTGCTGGAAGAAAAGGAACA
ATGTACGCGGGTGGGTGTACAGAGAAACACTTCTTCACTCGACGCGCGCG
TTCATCGTTTCAAAAAAAGTGAAACCACCAATGGATTTTACGATGGACGA
TTGAAGAACTAAAGGAATAATATTATTCATGAAGCCCCCCCCCTACTTCC
TTTAATTCCTACCGATGCTGCCTACTTCCTAATACACTCAACATCGATAA
AATTTACCACCTAGACAGTTTACAATTATTTATACACACAAGTTCTCGCC
TCTTTTCTTCTGCTACACAGGGAGTGGACGCTATCATCCACTTCTGCCCC
ACCGCCGAGGTCGATAACTATGACGATTGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig124038:540..1122-

>mRNA_H-elongata_contig124038.1808.1 ID=mRNA_H-elongata_contig124038.1808.1|Name=mRNA_H-elongata_contig124038.1808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig124038:540..1122- (Himanthalia elongata Himel1 dioecious)
CAGGAATGCAGCAAGTCAGCTCTCTCGGAGGCCGCCCAGGAGCAGCTCGA
CATATACAACAAAGACCTATACCTTGAGCCCGATTGCATCAATGGCGCAG
TGCCTTTGCCCGTGCACTGCAATTACATGGGCCTCGGGCAGGAGTGCCGC
GGATGCTACATGACCTGCGAAGGAGTAATTAAGTATATGGAAGACTTTCC
GGGAGAGGTTCAAACCTGGCAGGAATGCAGCAAGTCAGCTCTCTCGGAGG
CCGCCCAGGAGCAGCTCGACATATACAACAAAGACCTATACCTTGAGCCC
GATTGCATCAATGGCGCAGTGCCTTTGCCCGTGCACTGCAATTACATGGG
CCTCGGGCAGGAGTGCCGCGGATGCTACATGACCTGCGAAGGAGTAATTA
AGTATATGGAAGACTTTCCGGGAGAGGTTCAAACCTGGGGAGTGGACGCT
ATCATCCACTTCTGCCCCACCGCCGAGGTCGATAACTATGACGATTGCTA
GGGAGTGGACGCTATCATCCACTTCTGCCCCACCGCCGAGGTCGATAACT
ATGACGATTGCTAG
back to top