mRNA_H-elongata_contig123989.1803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123989.1803.1
Unique NamemRNA_H-elongata_contig123989.1803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A6H5JSC9_9PHAE (HK protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSC9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.070e-35
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:   28 QAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAE------GVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLLL-SSVG 342
            +AILVTAGEKGAAY +GG TGF+P FEG+ VVETTGAGDAFSAGFI +AIKL S+ E      G++  G  A DMVR+ASAVGALTCCG+GAI PQP + DV  LL  SSVG
Sbjct:  328 KAILVTAGEKGAAYAMGGQTGFIPVFEGLKVVETTGAGDAFSAGFISEAIKLLSSEEAGLSPAGLEGIGGRARDMVRFASAVGALTCCGDGAIKPQPLHGDVLALLQQSSVG 439
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A836CG16_9STRA (Ribokinase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG16_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.040e-21
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   28 QAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDLDGDVAHD-------MVRYASAVGALTCCGEGAIAPQPAYEDVRRLLLSS 336
            +A+LVT GEKGAA+ + G  GFVP FE + V+ETTGAGDAF+AGFI  A++ F    G    G ++ +        VR+ASAVGAL+C G+GAI PQP+ E V R L S+
Sbjct:  277 KAVLVTGGEKGAAFDVLGHAGFVPPFE-VDVMETTGAGDAFTAGFI-HAMRAFEWGAGTARQGALSAEERGEVDAAVRFASAVGALSCTGDGAIGPQPSAEAVARFLQSA 384
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: UPI001687EC1E (carbohydrate kinase n=1 Tax=Alkalinema sp. FACHB-956 TaxID=2692768 RepID=UPI001687EC1E)

HSP 1 Score: 87.4 bits (215), Expect = 4.110e-18
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   22 NYQAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLL 327
            N QAIL+TAGEKG  Y I G  G VP F  I V++TTGAGD+F+AGF+ Q  +L    + V  + ++AH MV YASAVGALT    GAIA QP   +V   L
Sbjct:  222 NLQAILMTAGEKGCTYWIRGHAGQVPAFA-IEVMDTTGAGDSFTAGFLHQLCQL---GDAVLDNAEIAHQMVVYASAVGALTTTRAGAIAAQPTAAEVDAFL 319
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A251WF81_9CYAN (Carbohydrate kinase n=1 Tax=Alkalinema sp. CACIAM 70d TaxID=1934309 RepID=A0A251WF81_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 4.110e-17
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   28 QAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLL 327
            QA+L+TAGEKG  Y I G  G +P F  I V++TTGAGD+F+AGF+ Q  +L    + V  + ++AH MV YASAVGALT    GAIA QP   +V   L
Sbjct:  224 QAVLMTAGEKGCTYWIRGHQGHIPAFT-IDVIDTTGAGDSFTAGFLHQLCQL---GDAVLDNAEMAHHMVVYASAVGALTTTRAGAIAAQPTAAEVDAFL 319
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: B7K0T1_RIPO1 (PfkB domain protein n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=B7K0T1_RIPO1)

HSP 1 Score: 83.6 bits (205), Expect = 1.110e-16
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   34 ILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLL 327
            ILVTAGEKG  Y++GG +G +  F  + VV+TTGAGD+F AGF+ Q        + +  D  +A +++RYA+AVGA+T    GAIAPQP  E+V   L
Sbjct:  228 ILVTAGEKGCQYLLGGNSGQIEAFS-VKVVDTTGAGDSFVAGFLHQCCL---KGDRILQDSQIAQEVIRYANAVGAITTTQPGAIAPQPTGEEVTAFL 321
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: UPI00187F0889 (carbohydrate kinase n=1 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI00187F0889)

HSP 1 Score: 82.4 bits (202), Expect = 2.610e-16
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   22 NYQAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLLL 330
            + + +LVTAG  G  Y +GG +G VP F+ + V +TTGAGDAF AGF+ Q   L +      LD D AH++VRYA+AVGALT    GAI+ QP   +V   L 
Sbjct:  219 HLEGVLVTAGAAGCRYSLGGHSGQVPGFD-VDVEDTTGAGDAFVAGFLHQ---LCARGRSCLLDADCAHEIVRYATAVGALTTTRAGAISGQPTPREVDAFLF 317
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A6H1U4H5_9CYAN (Carbohydrate kinase n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1U4H5_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.750e-16
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:   10 TYAV-NYQAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDL--DGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLL 327
            TY + N + +LVTAGEKG AY +G   G VP F  + VV+TTGAGD F AGF+ Q  +      G+    D + A  +VRYASAVGALT    GAIA QP + +V   L
Sbjct:  218 TYRIGNLEGVLVTAGEKGCAYCLGENEGKVPAFS-VEVVDTTGAGDGFVAGFVHQICQY-----GIQPLEDPEKAKQVVRYASAVGALTTMKPGAIAAQPTHAEVEAFL 320
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: K7W7L7_9NOST (PfkB family carbohydrate kinase n=8 Tax=Nostocales TaxID=1161 RepID=K7W7L7_9NOST)

HSP 1 Score: 82.0 bits (201), Expect = 3.810e-16
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   10 TYAVN-YQAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFI--VQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLLLS 333
            TY +N  + +LVT GE G AY +G   G +P F  + VV+TTGAGD+F AGFI  +Q + + S       DGD A+ +V YASAVGALT    GAIA QP   +V   L S
Sbjct:  218 TYRLNSLEGVLVTDGENGCAYCLGENEGKIPAFS-MSVVDTTGAGDSFLAGFIHQLQQVGIHSLK-----DGDTANRIVTYASAVGALTTIKPGAIASQPTAAEVEAFLAS 322
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A383WKL7_TETOB (PfkB domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WKL7_TETOB)

HSP 1 Score: 82.4 bits (202), Expect = 4.850e-16
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:   22 NYQAILVTAGEKGAAYVI----GGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDL---DGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLLLSSVG 342
            N  A+LVTAGE+GAAY      G  TGFVP F+ + V +TTGAGDAF+AGF+ + ++    A G+D    D     + V +A+A GALTC   GAIA QP+ + V+ L   S G
Sbjct:  288 NAPAVLVTAGEEGAAYCCRSTKGEHTGFVPVFK-VDVADTTGAGDAFTAGFVYKLLE----AGGLDRLLSDPKALKEAVVFAAATGALTCTKPGAIAAQPSLQQVQALFEESKG 396
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BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Match: A0A2W7C1D0_9CYAN (Carbohydrate kinase n=1 Tax=Leptolyngbya sp. TaxID=47254 RepID=A0A2W7C1D0_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 7.340e-16
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   34 ILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAFSAGFIVQAIKLFSTAEGVDL--DGDVAHDMVRYASAVGALTCCGEGAIAPQPAYEDVRRLL 327
            +LVTAGEKG AY + G  G +P F+ I V +TTGAGD+F AGF+ Q  +     +G+    D DVAH +V YASAVGA+T    GAIA QP   +V   L
Sbjct:  227 VLVTAGEKGCAYWLQGNQGKIPAFQ-IDVEDTTGAGDSFLAGFLHQLCQ-----QGIPSLQDADVAHTVVHYASAVGAMTTTRPGAIAAQPIAAEVEAFL 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123989.1803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSC9_9PHAE1.070e-3567.86HK protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A836CG16_9STRA5.040e-2151.82Ribokinase-like protein n=1 Tax=Tribonema minus Ta... [more]
UPI001687EC1E4.110e-1852.94carbohydrate kinase n=1 Tax=Alkalinema sp. FACHB-9... [more]
A0A251WF81_9CYAN4.110e-1751.00Carbohydrate kinase n=1 Tax=Alkalinema sp. CACIAM ... [more]
B7K0T1_RIPO11.110e-1647.96PfkB domain protein n=1 Tax=Rippkaea orientalis (s... [more]
UPI00187F08892.610e-1647.57carbohydrate kinase n=1 Tax=Leptolyngbya ectocarpi... [more]
A0A6H1U4H5_9CYAN2.750e-1648.62Carbohydrate kinase n=4 Tax=Cyanobacteria TaxID=11... [more]
K7W7L7_9NOST3.810e-1647.75PfkB family carbohydrate kinase n=8 Tax=Nostocales... [more]
A0A383WKL7_TETOB4.850e-1646.49PfkB domain-containing protein n=2 Tax=Tetradesmus... [more]
A0A2W7C1D0_9CYAN7.340e-1650.00Carbohydrate kinase n=1 Tax=Leptolyngbya sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123989contigH-elongata_contig123989:194..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog2880.D7FK00
Preferred nameFRK2
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
GOsGO:0000427,GO:0000428,GO:0003674,GO:0003824,GO:0004396,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0005975,GO:0005996,GO:0006000,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008610,GO:0008865,GO:0009058,GO:0009059,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009662,GO:0009889,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016043,GO:0016051,GO:0016053,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019200,GO:0019219,GO:0019222,GO:0019318,GO:0019438,GO:0019752,GO:0030054,GO:0030880,GO:0031323,GO:0031326,GO:0032774,GO:0032787,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042644,GO:0042646,GO:0042793,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043621,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046686,GO:0046835,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.carbohydrate kinase activity
EggNOG OGsCOG0524@1,KOG2855@2759
EC2.7.1.4
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.9968762-CDS-H-elongata_contig123989:193..3841622929729.9968762-CDS-H-elongata_contig123989:193..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123989 194..384 +
1691679136.01007-CDS-H-elongata_contig123989:193..3841691679136.01007-CDS-H-elongata_contig123989:193..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123989 194..384 +
1622929730.00754-CDS-H-elongata_contig123989:483..6491622929730.00754-CDS-H-elongata_contig123989:483..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123989 484..649 +
1691679136.0219138-CDS-H-elongata_contig123989:483..6491691679136.0219138-CDS-H-elongata_contig123989:483..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123989 484..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123989.1803.1prot_H-elongata_contig123989.1803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123989 194..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123989.1803.1

>prot_H-elongata_contig123989.1803.1 ID=prot_H-elongata_contig123989.1803.1|Name=mRNA_H-elongata_contig123989.1803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MSCTYAVNYQAILVTAGEKGAAYVIGGCTGFVPCFEGIGVVETTGAGDAF
SAGFIVQAIKLFSTAEGVDLDGDVAHDMVRYASAVGALTCCGEGAIAPQP
AYEDVRRLLLSSVGRSEP*
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mRNA from alignment at H-elongata_contig123989:194..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123989.1803.1 ID=mRNA_H-elongata_contig123989.1803.1|Name=mRNA_H-elongata_contig123989.1803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig123989:194..649+ (Himanthalia elongata Himel1 dioecious)
ATGTCATGTACTTATGCTGTGAATTATCAGGCGATTCTCGTCACGGCCGG
GGAAAAGGGAGCGGCCTACGTCATCGGGGGATGCACTGGGTTCGTCCCCT
GCTTTGAGGGCATCGGCGTCGTCGAGACCACCGGCGCCGGAGATGCCTTT
TCCGCGGGCTTCATTGTCCAAGCGATCAAGCTCTTCTCTACGTCCTTATC
GTCGTCATCGAAGAACGGTTCTGCCAGTAGAGGGACCGTAGTTGACGTTG
GCCTTGAGGCGGGACTTGATACAGCCATCTGGAACGGGAGTGCCGAGGGT
GTGGATCTTGATGGTGACGTGGCACACGACATGGTACGATATGCGTCGGC
CGTCGGGGCGTTGACCTGCTGTGGAGAAGGTGCGATAGCGCCTCAGCCGG
CCTACGAGGACGTACGCCGACTGCTGCTCTCATCGGTGGGGCGGAGCGAG
CCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig123989:194..649+

>mRNA_H-elongata_contig123989.1803.1 ID=mRNA_H-elongata_contig123989.1803.1|Name=mRNA_H-elongata_contig123989.1803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig123989:194..649+ (Himanthalia elongata Himel1 dioecious)
ATGTCATGTACTTATGCTGTGAATTATCAGGCGATTCTCGTCACGGCCGG
GGAAAAGGGAGCGGCCTACGTCATCGGGGGATGCACTGGGTTCGTCCCCT
GCTTTGAGGGCATCGGCGTCGTCGAGACCACCGGCGCCGGAGATGCCTTT
TCCGCGGGCTTCATTGTCCAAGCGATCAAGCTCTTCTCTACATGTCATGT
ACTTATGCTGTGAATTATCAGGCGATTCTCGTCACGGCCGGGGAAAAGGG
AGCGGCCTACGTCATCGGGGGATGCACTGGGTTCGTCCCCTGCTTTGAGG
GCATCGGCGTCGTCGAGACCACCGGCGCCGGAGATGCCTTTTCCGCGGGC
TTCATTGTCCAAGCGATCAAGCTCTTCTCTACTGCCGAGGGTGTGGATCT
TGATGGTGACGTGGCACACGACATGGTACGATATGCGTCGGCCGTCGGGG
CGTTGACCTGCTGTGGAGAAGGTGCGATAGCGCCTCAGCCGGCCTACGAG
GACGTACGCCGACTGCTGCTCTCATCGGTGGGGCGGAGCGAGCCGTAGTG
CCGAGGGTGTGGATCTTGATGGTGACGTGGCACACGACATGGTACGATAT
GCGTCGGCCGTCGGGGCGTTGACCTGCTGTGGAGAAGGTGCGATAGCGCC
TCAGCCGGCCTACGAGGACGTACGCCGACTGCTGCTCTCATCGGTGGGGC
GGAGCGAGCCGTAG
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