mRNA_H-elongata_contig100165.18.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100165.18.1
Unique NamemRNA_H-elongata_contig100165.18.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.830e-78
Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 1 
Query:   25 GHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSD-EEDLKHYPVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPELTVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDAELEGGRTS---VVDSGLEEPLVVSG--TGPGRG 834
            GH  +PGK+YTC   S ++ CMSCL        +C TCC++E + +C  ++S+W+FYAST+FF+ LCCCF+ LCGLTEVRRKKKGISFAQAWSVPQAMPILRTWP RS S+SD MS  GG  G      W  LSD EEDLK YPVAGL+DDSG+AFGFV  +PQ+LL +   S  + G  +   PP+PQEPELTVWISR+ N   +  A     I   +          N      R         GGR     VV + LEEPL++ G  TGPGRG
Sbjct:   43 GHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSD-MSQAGGEVG----TQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPS---PPSPQEPELTVWISRD-NEGASASAPAHRGIGGGSGASAVTGVEANSSEESSRGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRG 308
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BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.200e-6
Identity = 69/223 (30.94%), Postives = 94/223 (42.15%), Query Frame = 1 
Query:   85 CMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRT---------------WP-----GRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHYPVAGLIDDSGV-AFGFVAAMPQ---------SLLGTGTNSSGRPGPATMHLPPTPQEPELTVW-ISRERNSTMNRRAAR 654
            C+SC+ +  + T  C  CC    ++EC  LE  W    +T+    VF  C  S +  L E RRK+KGIS A+AWS+PQ MP+LR                W      G  V   D++   G  E   +   +  L  + D    PVA L +D+ V A  F    P          S   T  ++S R G       P  QE E   W +SR R++    R AR
Sbjct:   11 CVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGRASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRD-SDIPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAG-----PEGQEEEEHTWSVSRWRSARATARQAR 222
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BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-5
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   43 GKIYTCELTSS--LTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILR 330
            G+ Y C    S     C+SC+ +  + T  C  CC    ++EC  LE  W    +T+    VF  C  S +  L E RRK+KGIS A+AWS+PQ MP+LR
Sbjct:   86 GERYYCMHVESPQTRACVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLR 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE6.830e-7851.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FJE0_ECTSI1.200e-630.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5L4_9PHAE2.390e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100165contigH-elongata_contig100165:1202..2375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size876
Cds size876
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.1316214-CDS-H-elongata_contig100165:1201..13171622929544.1316214-CDS-H-elongata_contig100165:1201..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100165 1202..1317 +
1691679062.4753754-CDS-H-elongata_contig100165:1201..13171691679062.4753754-CDS-H-elongata_contig100165:1201..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100165 1202..1317 +
1622929544.1504464-CDS-H-elongata_contig100165:1615..23751622929544.1504464-CDS-H-elongata_contig100165:1615..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100165 1616..2375 +
1691679062.4865193-CDS-H-elongata_contig100165:1615..23751691679062.4865193-CDS-H-elongata_contig100165:1615..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100165 1616..2375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100165.18.1prot_H-elongata_contig100165.18.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100165 1202..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100165.18.1

>prot_H-elongata_contig100165.18.1 ID=prot_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MVQFVSRAGHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVE
GDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAW
SVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHY
PVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPEL
TVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDA
ELEGGRTSVVDSGLEEPLVVSGTGPGRGVEGESGAGRNTSRG
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mRNA from alignment at H-elongata_contig100165:1202..2375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1174bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAATTCGTGAGCAGAGCGGGGCACGCGGTTACTCCGGGCAAGAT
TTACACATGCGAACTTACGTCGAGCTTGACTGGGTGCATGAGCTGTCTAG
GGACGGTCAAGAACATGTACGTATGGCGTTCAGTGAAATACGTAACGGTA
TCTTCCATAAAAATACATAACCGCATCTATGATATCTGCTCACTTGCAAT
GAGCTCTTGCAGGCGACCAAATATCGCCCTATATTTGCTGCACTGAACTC
TTAGATACATTCATACCTGAGTGCGCGGGTTTGCCTTCAGCGCAGCAAAT
CGTAATGCTTCTATGTTTCCACCCTGTTTTCTGGCGTCCTCCGGTCTTCT
GGTCCTCTCTTGAATGACTCCGATGATGATGATGATGGCTCTGCTCGGCT
GGCTCCTTCCGCAGCACCAACACGTGTACGACCTGCTGCACGGTGGAGGG
GGACTCGGAATGTCGAACCCTGGAGTCGGACTGGGAGTTCTACGCGTCGA
CTATTTTTTTCGTGTTCCTCTGCTGTTGTTTCTCCGTGCTGTGCGGCCTC
ACTGAAGTCAGGCGGAAAAAGAAGGGAATCTCGTTTGCGCAAGCGTGGTC
CGTACCCCAAGCGATGCCCATCCTTCGCACTTGGCCCGGACGATCCGTGT
CGGCGTCAGATATTATGTCAGTAGGGGGTGGGGCGGAGGGCGATGATCAC
CATCAGCATTGGCAACCGCTGTCCGACGAGGAGGATCTAAAGCACTACCC
CGTGGCTGGGTTGATCGACGACTCTGGCGTGGCGTTTGGCTTCGTCGCGG
CCATGCCGCAATCGCTTCTGGGGACAGGGACTAACTCTTCGGGACGCCCG
GGGCCAGCCACGATGCATCTGCCGCCCACACCCCAGGAGCCAGAGCTGAC
GGTGTGGATATCGAGAGAAAGAAATTCCACCATGAATAGGAGGGCGGCAC
GTCCTCACAGTATCGCCAGCACGGCCTTGATTGAAGGGACTCACGAGGGC
GGTGGCAATGTCGGCAGTAGCGAAGGTAGGGTATGTAGGGTAGATGCTGA
GCTGGAAGGAGGGAGAACTTCAGTGGTCGACAGCGGTCTGGAAGAACCTC
TTGTTGTGAGCGGGACCGGACCTGGTAGAGGAGTCGAGGGCGAAAGTGGC
GCTGGCAGGAATACGAGTAGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig100165:1202..2375+

>mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAATTCGTGAGCAGAGCGGGGCACGCGGTTACTCCGGGCAAGAT
TTACACATGCGAACTTACGTCGAGCTTGACTGGGTGCATGAGCTGTCTAG
GGACGGTCAAGAACATATGGTGCAATTCGTGAGCAGAGCGGGGCACGCGG
TTACTCCGGGCAAGATTTACACATGCGAACTTACGTCGAGCTTGACTGGG
TGCATGAGCTGTCTAGGGACGGTCAAGAACATCACCAACACGTGTACGAC
CTGCTGCACGGTGGAGGGGGACTCGGAATGTCGAACCCTGGAGTCGGACT
GGGAGTTCTACGCGTCGACTATTTTTTTCGTGTTCCTCTGCTGTTGTTTC
TCCGTGCTGTGCGGCCTCACTGAAGTCAGGCGGAAAAAGAAGGGAATCTC
GTTTGCGCAAGCGTGGTCCGTACCCCAAGCGATGCCCATCCTTCGCACTT
GGCCCGGACGATCCGTGTCGGCGTCAGATATTATGTCAGTAGGGGGTGGG
GCGGAGGGCGATGATCACCATCAGCATTGGCAACCGCTGTCCGACGAGGA
GGATCTAAAGCACTACCCCGTGGCTGGGTTGATCGACGACTCTGGCGTGG
CGTTTGGCTTCGTCGCGGCCATGCCGCAATCGCTTCTGGGGACAGGGACT
AACTCTTCGGGACGCCCGGGGCCAGCCACGATGCATCTGCCGCCCACACC
CCAGGAGCCAGAGCTGACGGTGTGGATATCGAGAGAAAGAAATTCCACCA
TGAATAGGAGGGCGGCACGTCCTCACAGTATCGCCAGCACGGCCTTGATT
GAAGGGACTCACGAGGGCGGTGGCAATGTCGGCAGTAGCGAAGGTAGGGT
ATGTAGGGTAGATGCTGAGCTGGAAGGAGGGAGAACTTCAGTGGTCGACA
GCGGTCTGGAAGAACCTCTTGTTGTGAGCGGGACCGGACCTGGTAGAGGA
GTCGAGGGCGAAAGTGGCGCTGGCAGGAATACGAGTAGAGGTCACCAACA
CGTGTACGACCTGCTGCACGGTGGAGGGGGACTCGGAATGTCGAACCCTG
GAGTCGGACTGGGAGTTCTACGCGTCGACTATTTTTTTCGTGTTCCTCTG
CTGTTGTTTCTCCGTGCTGTGCGGCCTCACTGAAGTCAGGCGGAAAAAGA
AGGGAATCTCGTTTGCGCAAGCGTGGTCCGTACCCCAAGCGATGCCCATC
CTTCGCACTTGGCCCGGACGATCCGTGTCGGCGTCAGATATTATGTCAGT
AGGGGGTGGGGCGGAGGGCGATGATCACCATCAGCATTGGCAACCGCTGT
CCGACGAGGAGGATCTAAAGCACTACCCCGTGGCTGGGTTGATCGACGAC
TCTGGCGTGGCGTTTGGCTTCGTCGCGGCCATGCCGCAATCGCTTCTGGG
GACAGGGACTAACTCTTCGGGACGCCCGGGGCCAGCCACGATGCATCTGC
CGCCCACACCCCAGGAGCCAGAGCTGACGGTGTGGATATCGAGAGAAAGA
AATTCCACCATGAATAGGAGGGCGGCACGTCCTCACAGTATCGCCAGCAC
GGCCTTGATTGAAGGGACTCACGAGGGCGGTGGCAATGTCGGCAGTAGCG
AAGGTAGGGTATGTAGGGTAGATGCTGAGCTGGAAGGAGGGAGAACTTCA
GTGGTCGACAGCGGTCTGGAAGAACCTCTTGTTGTGAGCGGGACCGGACC
TGGTAGAGGAGTCGAGGGCGAAAGTGGCGCTGGCAGGAATACGAGTAGAG
GT
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