prot_H-elongata_contig123896.1798.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123896.1798.1
Unique Nameprot_H-elongata_contig123896.1798.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: L0P1Q5_PHYED (PH01B035L11.21 protein n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P1Q5_PHYED)

HSP 1 Score: 145 bits (365), Expect = 7.890e-37
Identity = 80/146 (54.79%), Postives = 104/146 (71.23%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M +EL++ E + V+ LV   E PRG N++G++WVF NK+  DG I+R KAR VAQGF+QV G DF  TFAPVARLE IR  LA AA  G K+ Q DV +AFL+  ++E  ++YVRQPPGFE   PK    V++L ++LYGLKQ+PR
Sbjct: 1488 MHEELENFERNKVWSLV---EPPRGHNIIGTKWVFKNKQSEDGVIIRNKARLVAQGFSQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEE--EVYVRQPPGFEN--PKYPNHVFKLSKALYGLKQAPR 1626          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: Q7XPI7_ORYSJ (OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XPI7_ORYSJ)

HSP 1 Score: 144 bits (363), Expect = 1.470e-36
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M +EL++ E + V+ LV   E P G NV+G++WVF NK G DG I+R KAR VAQGFTQV G DF  TFAPVARLE IR  LA AA  G K+ Q DV +AFL+  ++E  ++YV+QPPGFE   PK    V++L ++LYGLKQ+PR
Sbjct: 1281 MHEELENFERNKVWSLV---EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEE--EVYVKQPPGFEN--PKFPNHVFKLEKALYGLKQAPR 1419          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ)

HSP 1 Score: 142 bits (357), Expect = 9.300e-36
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M +EL++ E + V+ LV   E P G +V+G++WVF NK G DG I+R KAR VAQGFTQV G DF  TFAPVARLE IR  LA AA  G K+ Q DV +AFL+  ++E  ++YV+QPPGFE   PK    V++L ++LYGLKQ+PR
Sbjct: 1306 MHEELENFERNKVWSLV---EPPLGFSVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEE--EVYVKQPPGFEN--PKFPNHVFKLDKALYGLKQAPR 1444          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A151TPM8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TPM8_CAJCA)

HSP 1 Score: 130 bits (328), Expect = 2.790e-35
Identity = 71/147 (48.30%), Postives = 101/147 (68.71%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRT 147
            ME+E+K +E +  +ELV   + P G +++G +WV+  K  PDG I + KAR +A+G++Q P  D+  TFAPVARL+TIRA +ALAA  G  + Q DV +AFL+  ++E  +IYV QPPGF   G +G+  V RL ++ YGLKQ+PRT
Sbjct:    1 MEEEIKMIEKNNTWELV---DYPHGKDIIGVKWVYKTKLNPDGTIQKHKARLIAKGYSQQPRVDYNETFAPVARLDTIRALIALAAQKGWNIYQLDVKSAFLNGVLEE--EIYVEQPPGFVMKGHEGK--VLRLKKASYGLKQAPRT 140          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: UPI002024A39C (DDE-type integrase/transposase/recombinase n=7 Tax=Bacteria TaxID=2 RepID=UPI002024A39C)

HSP 1 Score: 139 bits (350), Expect = 7.690e-35
Identity = 75/146 (51.37%), Postives = 102/146 (69.86%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M+ EL   + + V+ELVK  + PR  N++G++W+F NK+  DG+++R KAR VAQG+TQV G DF  TFAPVARLE IR  LA A H    + Q DV +AFL+  ++E  ++YV QPPGFE+  PK    V+RL ++LYGLKQ+PR
Sbjct:  541 MQDELLQFKLNDVWELVKRPD-PRKHNIIGTKWIFRNKQDEDGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHNIILYQMDVKSAFLNGKLEE--EVYVAQPPGFED--PKNPDKVFRLKKALYGLKQAPR 681          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A7H4LI56_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LI56_WHEAT)

HSP 1 Score: 139 bits (350), Expect = 7.890e-35
Identity = 73/146 (50.00%), Postives = 104/146 (71.23%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M++EL+  E + V+ELVK  + P   NV+G++W++ NK+   G+++R KAR VAQG+TQV G DF  TFAPVARLE IR  LA A H    + Q DV +AFL+  ++E  ++YV QPPGFE+  PK   +V++L+++LYGLKQ+PR
Sbjct:  861 MQEELQQFELNNVWELVKHPD-PHKHNVIGTKWIYHNKQDEHGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHNILLYQMDVKSAFLNGKIEE--EVYVAQPPGFED--PKHPDMVYKLNKALYGLKQAPR 1001          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: Q2R5A4_ORYSJ (Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R5A4_ORYSJ)

HSP 1 Score: 138 bits (348), Expect = 1.440e-34
Identity = 77/146 (52.74%), Postives = 101/146 (69.18%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M +EL++ E + V+ LV   E P G N++G++WVF NK+  DG I+R KARFVAQGFTQV G DF  TFAPVAR+E IR  LA AA  G K+ Q DV +AFL+  + E  ++YV+QPPGFE   P     V++L + LYG+KQ+PR
Sbjct:  764 MHEELENFERNKVWTLV---EPPSGHNIIGTKWVFKNKQNEDGLIVRNKARFVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQE--EVYVKQPPGFEN--PDFPNHVFKLSKGLYGMKQAPR 902          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A5E4GMQ8_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GMQ8_PRUDU)

HSP 1 Score: 132 bits (331), Expect = 1.780e-34
Identity = 70/146 (47.95%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M++E+ ++ + G + LV    LP   N++G +W+F  K+  DG I R KAR VA+GF+Q PGQD+  TF+PV +  T+R  LALAAHFG ++RQ DV  AFLH  + E  ++Y+ QPPGFE+       LV +L +SLYGLKQ+PR
Sbjct:   59 MKEEIDALHSQGTWSLVP---LPHNKNLVGCKWIFKIKKHADGSIARHKARLVAKGFSQEPGQDYGETFSPVVKPTTVRIVLALAAHFGWQLRQLDVKNAFLHGILQE--EVYMAQPPGFEDS--HHPTLVCKLLKSLYGLKQAPR 197          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: UPI002024970E (DDE-type integrase/transposase/recombinase n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002024970E)

HSP 1 Score: 137 bits (346), Expect = 2.640e-34
Identity = 74/146 (50.68%), Postives = 103/146 (70.55%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M++EL   E + V+ELVK  + PR  N++G++W++ NK+  +G ++R KAR VAQG+TQV G DF  TFAPVARLE IR  LA A H    + Q DV +AFL+  ++E  ++YV QPPGFE+  PK    V+RL+++LYGLKQ+PR
Sbjct:  501 MQEELHQFELNNVWELVKRPD-PRKHNIIGTKWIYRNKQDENGLVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHDITLYQMDVKSAFLNGKLEE--EVYVAQPPGFED--PKHPDKVFRLNKALYGLKQAPR 641          
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A7H4LFA6_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LFA6_WHEAT)

HSP 1 Score: 137 bits (346), Expect = 2.710e-34
Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = 0
Query:    1 MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 146
            M++EL+  E + V+ELVK  + PR  N++G++W++  K+   G+++R KAR VAQG+TQV G DF  TFAPVARLE IR  LA A H    + Q DV +AFL+  ++E   +YV QPPGFE+  PK   +V++L+++LYGLKQ+PR
Sbjct:  888 MQEELQQFELNNVWELVKRPD-PRKHNIIGTKWIYRKKQDEHGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHNILLYQMDVKSAFLNGKIEE---VYVAQPPGFED--PKHPDMVYKLNKALYGLKQAPR 1027          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L0P1Q5_PHYED7.890e-3754.79PH01B035L11.21 protein n=1 Tax=Phyllostachys eduli... [more]
Q7XPI7_ORYSJ1.470e-3655.48OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp... [more]
Q5KQE8_ORYSJ9.300e-3654.79Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
A0A151TPM8_CAJCA2.790e-3548.30Retrovirus-related Pol polyprotein from transposon... [more]
UPI002024A39C7.690e-3551.37DDE-type integrase/transposase/recombinase n=7 Tax... [more]
A0A7H4LI56_WHEAT7.890e-3550.00Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
Q2R5A4_ORYSJ1.440e-3452.74Retrotransposon protein, putative, unclassified n=... [more]
A0A5E4GMQ8_PRUDU1.780e-3447.95PREDICTED: Retrovirus-related Pol poly from transp... [more]
UPI002024970E2.640e-3450.68DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A7H4LFA6_WHEAT2.710e-3449.32Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 13..146
e-value: 5.0E-37
score: 127.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..147
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123896contigH-elongata_contig123896:132..677 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123896.1798.1mRNA_H-elongata_contig123896.1798.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123896 81..889 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123896.1798.1 ID=prot_H-elongata_contig123896.1798.1|Name=mRNA_H-elongata_contig123896.1798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKA
RFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTA
FLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRTGMG
SSRPSSWRSWASLRVTRTRASSGARQTECSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like