mRNA_H-elongata_contig123896.1798.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A2G8S4X4_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S4X4_9APHY) HSP 1 Score: 159 bits (401), Expect = 2.080e-40 Identity = 83/161 (51.55%), Postives = 111/161 (68.94%), Query Frame = 1
Query: 1 TYDAAVASPERDEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQS 483
T + A+ SP+ DEWLAAM KEL+S+ +EL +ELPRG +G++WVF K DG ++R KAR VAQGF+Q+PG DF T+APVA+ E+IRA AL A G + DV +AFL++ + +G + YV+QPPGF + G E LVWRL ++LYGLKQS
Sbjct: 867 TVEEALDSPDADEWLAAMHKELESIAALETFEL---TELPRGRKPIGTKWVFLKKRDTDGRVVRFKARLVAQGFSQIPGTDFNNTYAPVAKPESIRAICALTAQRGGVIHVVDVDSAFLNSEIPDGEEAYVKQPPGFVQQGQ--ESLVWRLSKALYGLKQS 1022
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: L0P1Q5_PHYED (PH01B035L11.21 protein n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P1Q5_PHYED) HSP 1 Score: 151 bits (382), Expect = 7.860e-38 Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 1
Query: 34 DEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
+ W+ AM +EL++ E + V+ LV E PRG N++G++WVF NK+ DG I+R KAR VAQGF+QV G DF TFAPVARLE IR LA AA G K+ Q DV +AFL+ ++E ++YVRQPPGFE PK V++L ++LYGLKQ+PR
Sbjct: 1482 ESWVNAMHEELENFERNKVWSLV---EPPRGHNIIGTKWVFKNKQSEDGVIIRNKARLVAQGFSQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEE--EVYVRQPPGFEN--PKYPNHVFKLSKALYGLKQAPR 1626
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: Q7XPI7_ORYSJ (OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XPI7_ORYSJ) HSP 1 Score: 150 bits (380), Expect = 1.470e-37 Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 34 DEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
+ W+ AM +EL++ E + V+ LV E P G NV+G++WVF NK G DG I+R KAR VAQGFTQV G DF TFAPVARLE IR LA AA G K+ Q DV +AFL+ ++E ++YV+QPPGFE PK V++L ++LYGLKQ+PR
Sbjct: 1275 ENWVNAMHEELENFERNKVWSLV---EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEE--EVYVKQPPGFEN--PKFPNHVFKLEKALYGLKQAPR 1419
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A443QXM6_9ACAR (Retrovirus-related pol polyprotein from transposon tnt 1-94-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QXM6_9ACAR) HSP 1 Score: 138 bits (347), Expect = 6.870e-37 Identity = 75/163 (46.01%), Postives = 109/163 (66.87%), Query Frame = 1
Query: 1 TYDAAVASPERDEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
+Y+ AV S + EWL AM +E+ S+ + ++LV E P+G NV+ +RWVF KE DG + R KAR VA+G+TQ G D+ TFAPV ++ ++RA LA+AA+ ++ QFDV TAFL+ ++E L +++QP GF++ K V RL +SLYGLKQ+PR
Sbjct: 8 SYEDAVESADSKEWLKAMNEEMDSLRKNKTWKLV---EQPKGVNVINNRWVFKVKENTDGSVQRYKARLVAKGYTQKRGVDYNETFAPVVKMNSVRAILAIAANEDFEIVQFDVKTAFLYGELNEDL--FMKQPEGFDDGSDK----VCRLQKSLYGLKQAPR 161
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT) HSP 1 Score: 148 bits (374), Expect = 7.330e-37 Identity = 80/163 (49.08%), Postives = 110/163 (67.48%), Query Frame = 1
Query: 1 TYDAAVASPERDEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
T A++SP++ +W+ AMEKE++S++T+ V+ LV ELP +GS+WVF K DG + KAR VAQGF+Q G D+ TF+PVAR E++R +ALAA G K+ Q DV TAFL+ + E ++Y++QP GF E G E LV RL RS+YGLK+SPR
Sbjct: 514 TVKEALSSPQKAKWVKAMEKEMESLKTNEVWNLV---ELPENRKAVGSKWVFRIKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKE--EVYMKQPEGFIEKGK--EHLVCRLRRSIYGLKKSPR 669
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ) HSP 1 Score: 148 bits (374), Expect = 9.040e-37 Identity = 82/152 (53.95%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 34 DEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
+ W+ AM +EL++ E + V+ LV E P G +V+G++WVF NK G DG I+R KAR VAQGFTQV G DF TFAPVARLE IR LA AA G K+ Q DV +AFL+ ++E ++YV+QPPGFE PK V++L ++LYGLKQ+PR
Sbjct: 1300 ENWVNAMHEELENFERNKVWSLV---EPPLGFSVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEE--EVYVKQPPGFEN--PKFPNHVFKLDKALYGLKQAPR 1444
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: UPI002024A39C (DDE-type integrase/transposase/recombinase n=7 Tax=Bacteria TaxID=2 RepID=UPI002024A39C) HSP 1 Score: 147 bits (372), Expect = 1.520e-36 Identity = 78/151 (51.66%), Postives = 106/151 (70.20%), Query Frame = 1
Query: 37 EWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
EW+ AM+ EL + + V+ELVK + PR N++G++W+F NK+ DG+++R KAR VAQG+TQV G DF TFAPVARLE IR LA A H + Q DV +AFL+ ++E ++YV QPPGFE+ PK V+RL ++LYGLKQ+PR
Sbjct: 536 EWIQAMQDELLQFKLNDVWELVKRPD-PRKHNIIGTKWIFRNKQDEDGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHNIILYQMDVKSAFLNGKLEE--EVYVAQPPGFED--PKNPDKVFRLKKALYGLKQAPR 681
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A7H4LI56_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LI56_WHEAT) HSP 1 Score: 147 bits (372), Expect = 1.590e-36 Identity = 76/151 (50.33%), Postives = 108/151 (71.52%), Query Frame = 1
Query: 37 EWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
EW+ AM++EL+ E + V+ELVK + P NV+G++W++ NK+ G+++R KAR VAQG+TQV G DF TFAPVARLE IR LA A H + Q DV +AFL+ ++E ++YV QPPGFE+ PK +V++L+++LYGLKQ+PR
Sbjct: 856 EWIQAMQEELQQFELNNVWELVKHPD-PHKHNVIGTKWIYHNKQDEHGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIRILLAYANHHNILLYQMDVKSAFLNGKIEE--EVYVAQPPGFED--PKHPDMVYKLNKALYGLKQAPR 1001
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 145 bits (367), Expect = 3.130e-36 Identity = 79/163 (48.47%), Postives = 109/163 (66.87%), Query Frame = 1
Query: 1 TYDAAVASPERDEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
T A++SP++ +W+ AMEKE++S++T+ V+ LV ELP +GS+WVF K DG + KAR VAQGF+Q G D+ TF+PVAR E++R +ALAA G K+ Q DV TAFL+ + E ++Y++QP GF + G E LV RL RS+ GLKQSPR
Sbjct: 132 TVKEALSSPQKTKWVKAMEKEMESLKTNEVWNLV---ELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKE--EVYMKQPEGFIDKGK--EHLVCRLRRSICGLKQSPR 287
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Match: A0A7D9DFN2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DFN2_PARCT) HSP 1 Score: 140 bits (352), Expect = 3.700e-36 Identity = 76/162 (46.91%), Postives = 105/162 (64.81%), Query Frame = 1
Query: 4 YDAAVASPERDEWLAAMEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKARFVAQGFTQVPGQDFLATFAPVARLETIRATLALAAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPR 489
Y A+ SP+ EW AM++E+ S++ + YEL S LP G +G +WV+T K+ +G I KAR+VA+G++QV G D+ TFAP A + +IR + LA V Q DV TA+LHAP+ + ++Y+ QP GFEE GERLV+RL +SLYGLKQS R
Sbjct: 72 YTEAMGSPQAREWEQAMKEEISSLKENDTYEL---STLPEGKASVGGKWVYTTKQDQNG-IESFKARYVAKGYSQVKGIDYQETFAPTASITSIRVLMQLAVKHDLIVHQMDVKTAYLHAPITQ--ELYIDQPQGFEEVSESGERLVYRLKKSLYGLKQSGR 227 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123896.1798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123896.1798.1 >prot_H-elongata_contig123896.1798.1 ID=prot_H-elongata_contig123896.1798.1|Name=mRNA_H-elongata_contig123896.1798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp MEKELKSMETHGVYELVKESELPRGTNVLGSRWVFTNKEGPDGEILRRKAback to top mRNA from alignment at H-elongata_contig123896:81..889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123896.1798.1 ID=mRNA_H-elongata_contig123896.1798.1|Name=mRNA_H-elongata_contig123896.1798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig123896:81..889+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123896:81..889+ >mRNA_H-elongata_contig123896.1798.1 ID=mRNA_H-elongata_contig123896.1798.1|Name=mRNA_H-elongata_contig123896.1798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig123896:81..889+ (Himanthalia elongata Himel1 dioecious)back to top |