prot_H-elongata_contig123873.1796.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123873.1796.1
Unique Nameprot_H-elongata_contig123873.1796.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length227
Homology
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.840e-35
Identity = 84/205 (40.98%), Postives = 117/205 (57.07%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPE-GLKIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKSDR-----LWVETIAYACDLWNRCTSSSLDSG-TSPYELWYGRRPTFDNIPPF 198
            C+ CS S+ +   + KST+ RA  +  RLF++L G     S+G N + ++  DD TR+ +V FL+HKSDA  A    + DY A     ++ V RTDGGG++ GQF  + R+ GIK E TPP  P YNG+ ERALGLL D+ +A      E   D      LW E I+ AC   N CT+++ + G  SP EL++G  P   +  PF
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 9.020e-34
Identity = 84/237 (35.44%), Postives = 126/237 (53.16%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA ++  R F++LSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G    +S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P    C  LG
Sbjct:  341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLG 570          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.280e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 937          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.290e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.290e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.300e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.230e-32
Identity = 81/229 (35.37%), Postives = 122/229 (53.28%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYL----RRSKPGHKLAPR 216
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P Y+G+ ERALGL+ D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L     + K  HK  P+
Sbjct:    9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLIPAVYKVKRTHKSEPK 230          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.320e-31
Identity = 84/237 (35.44%), Postives = 124/237 (52.32%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 224
            C+ CS ++     +P  T  RA +R  R+F+DLSG     SL    + ++  D +TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S   W E IA+AC+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  569 CLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 798          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.490e-30
Identity = 82/227 (36.12%), Postives = 121/227 (53.30%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGL--KIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKS--------DRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLRRSKPGHKLAPRG 217
            C+ CS S  +   V KST  RA ++  R+++DL G     S+G N + ++  DDF+R+ +V FL+HKSDA   L   + DY   +G+  ++ + RTDGGG++ GQF  + R+ GIK E TPP+ P YNG+ ERALG L   T A L   ++             LW E I+ AC   N   + S +   S YE+++   P   +  PF     L+ S+   K  P+G
Sbjct:  620 CLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKG 844          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.720e-30
Identity = 82/223 (36.77%), Postives = 121/223 (54.26%), Query Frame = 0
Query:   14 VPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGL--KIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKSDR-----LWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFG-TVEYLR----RSKPGHKLAPRGASCIILG 224
            V KST  RA ++  R+++DL G     S+G N + ++  DDF+R+ +V FL+HKSDA       + DY   +G+  ++ + RTDGGG++ GQF  L R+ GIK E TPP+ P YNG+ ERALGL+ D  +A      +   D      LW E I+ AC   N   + S +   S YE+++      D+ PP G T  +L+    +S+   K  P+G     LG
Sbjct:    9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFH------DSPPPVGSTYPFLKPAVFKSRRKAKSQPKGEKGWYLG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE3.840e-3540.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE9.020e-3435.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI6_9PHAE1.280e-3335.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.290e-3335.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.290e-3335.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.300e-3335.86Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5J7U9_9PHAE2.230e-3235.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE2.320e-3135.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE1.490e-3036.12Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAM7_9PHAE3.720e-3036.77Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 29..139
e-value: 3.9E-10
score: 39.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 11..189
score: 17.619
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 15..208
e-value: 1.6E-23
score: 84.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 27..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123873contigH-elongata_contig123873:872..1552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123873.1796.1mRNA_H-elongata_contig123873.1796.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123873 872..1552 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123873.1796.1 ID=prot_H-elongata_contig123873.1796.1|Name=mRNA_H-elongata_contig123873.1796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVML
CIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLKIGVIRTDGGGKW
HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEG
KSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGT
VEYLRRSKPGHKLAPRGASCIILGLTP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf