mRNA_H-elongata_contig123873.1795.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 75.1 bits (183), Expect = 1.750e-15 Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+WK A+E E++ W +V RP+G+ V+ + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E+
Sbjct: 45 KWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKET 114
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM) HSP 1 Score: 77.4 bits (189), Expect = 5.730e-15 Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 7 WKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
WK+A++ E+ I RG W+++ +P V+G + ++KRK D G I KYK RLVAQGF+Q+KGI YEES
Sbjct: 472 WKKAMDDEIQLHIKRGTWELISKPPMARVIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEES 540
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: T1IUK0_STRMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IUK0_STRMM) HSP 1 Score: 74.3 bits (181), Expect = 2.720e-14 Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+WK+A++ EM+ + RG WQ+V R V+G+R +FK+KID G K+K RLVAQGFR KG +EES
Sbjct: 40 KWKKAMKAEMEAQKQRGTWQLVSRSTNHKVIGSRWIFKQKIDLTGSSPKFKVRLVAQGFRITKGADFEES 109
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC) HSP 1 Score: 75.5 bits (184), Expect = 2.730e-14 Identity = 30/70 (42.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+W++A++ E + ++ G W++++ P + +G++ VFK K ++ G +EKYK RLVAQGF+QVKG+ YEE+
Sbjct: 113 EWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEET 182
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 72.4 bits (176), Expect = 3.340e-14 Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+WK A+E EM+ A V+ +V+ PK K V+G++ +F+RKI+ DG +E+YK RLVAQ F Q G+ Y+E+
Sbjct: 20 KWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDET 89
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI) HSP 1 Score: 71.2 bits (173), Expect = 5.100e-14 Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 7 WKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
W+RAIE E++ G W+ V +P+G + + TR VF +K D DG++EKYK RLV +GFRQ G+++ ES
Sbjct: 24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFES 92
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+WK A+E EM+ A VW +V+ PKG+ +G++ VFK K+D DG E++K RLVAQGF Q G Y+E+
Sbjct: 251 KWKEAMEKEMESLYANNVWNLVELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDET 320
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR) HSP 1 Score: 73.2 bits (178), Expect = 1.790e-13 Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 1 PQWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHY 204
PQWK AI+ E+D + W++V P G LG R +FKRK++ DG I+KYK RLV +GFRQ +G+ Y
Sbjct: 284 PQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDY 351
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO) HSP 1 Score: 72.8 bits (177), Expect = 2.450e-13 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+W+RAI EM I W +V RP+G ++G+R+V + K DG +E+ K RLVAQGF Q GIH++E+
Sbjct: 749 EWRRAIAAEMKSVIRNDTWTLVDRPRGCKIVGSRIVLRNKFKPDGTLERRKARLVAQGFSQQPGIHFQET 818
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 72.4 bits (176), Expect = 3.370e-13 Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
+W++A E E++ GV++ V RP+ + ++G++ VFK K DG++EKYK RLVAQGF QV+GI Y E+
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNET 1078 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123873.1795.1 >prot_H-elongata_contig123873.1795.1 ID=prot_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig123873:2..214- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123873.1795.1 ID=mRNA_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig123873:2..214- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123873:2..214- >mRNA_H-elongata_contig123873.1795.1 ID=mRNA_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig123873:2..214- (Himanthalia elongata Himel1 dioecious)back to top |