mRNA_H-elongata_contig123820.1793.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.180e-54 Identity = 97/131 (74.05%), Postives = 112/131 (85.50%), Query Frame = 1
Query: 1 MSLERLSLRRNSFSSPEAVDMFLSPPP-APAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
M++ RLSLRRNS SS AV+ FL+PP AP GSLPLS SIR+LDLSSN L VP ++F+CRGLQTL L +N LSD+SGLPWA L +LENLDLS+NRLR LGDV+LMTWLRRLNLENN+I+PVPLELGLCTG
Sbjct: 379 MAIYRLSLRRNSLSSSAAVEAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGLQTLVLAYNPLSDVSGLPWAALGSLENLDLSNNRLRSLGDVVLMTWLRRLNLENNDISPVPLELGLCTG 509
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI) HSP 1 Score: 165 bits (417), Expect = 5.230e-45 Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1
Query: 64 FLSPPP-APAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
FL+PP AP GSLPLS SIR+LDLSSN L VP ++F+CRGLQTL L +N LSD+SGLPWA L +LE LDLS+NRLR LGDV+LMTWLRRLNLENN+I+PVPLELGLCTG
Sbjct: 486 FLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGLQTLVLAYNPLSDVSGLPWAALGSLETLDLSNNRLRCLGDVVLMTWLRRLNLENNDISPVPLELGLCTG 595
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: T0QQ18_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QQ18_SAPDV) HSP 1 Score: 80.9 bits (198), Expect = 3.290e-15 Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 88 AGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
AG+ +++LD+ +N LS++P ++ L TL L FN LS L+G+PW + AL + S N+L DLG + L L++ENN + +P ELGLC
Sbjct: 488 AGAFHARMKLKELDVRNNALSMLPANLHQLSSLNTLLLSFNRLSTLAGMPWRLMKALSIVSASDNKLTDLGTIFEAPTLSSLSVENNSLQAIPAELGLC 586
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A0N7L4J0_PLAHL (Leucine-rich repeat protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4J0_PLAHL) HSP 1 Score: 80.9 bits (198), Expect = 3.310e-15 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 7 LERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
LE L LR+N + + +A+ FL S L +++++DL SN LS++P R L+ L L N + L PW+ L + +DLS N+LR LG + L+ L+ ENN I VP+ELGLC
Sbjct: 478 LEVLRLRKN-YLTADAIADFLR------NSTTLGTTLKEIDLRSNKLSIIPVETGQLRSLENLLLSHNQIEALDQFPWSHLTKVSVIDLSDNKLRSLGRIYDAPLLQSLSFENNNITKVPVELGLC 596
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A8J2X490_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X490_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.570e-15 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 103 LSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
L+R++ +LD+S N L +PRS+F + L+++ L N LS G WA+L ALE L+L+ NRL LGDV LR L+L NN + VP ELGLC
Sbjct: 506 LARNLSELDMSGNRLIRIPRSLFGLQALRSVTLARNELSGDLGRGWASLLALETLNLADNRLGALGDVHKAPVLRTLDLGNNCLRSVPPELGLC 599
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A1W0A3H6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 6.120e-15 Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 1
Query: 4 SLERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCT 387
SL + LR+NS + D F S +++LDL +N L +P++++ + L TL L +N +S L +PW L+AL + +S N+L LG + L L++ENN + +P ELGLC+
Sbjct: 462 SLIHVRLRKNSLTEAAFGDNFTS-----------RMKLKELDLRNNALCALPQNIYRLKALYTLLLSYNRISTLDNVPWIALSALSIVSISDNKLTSLGTIYEAPVLSSLSVENNNLQQIPAELGLCS 578
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A1V9ZKS6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKS6_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.630e-12 Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 7 LERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
L L LR+NS + D F +++LDL +N LS +P ++ L TL L FN L+ L+ + W+ +AAL + ++ N+L D+G + L L++ENN + +P ELGLC
Sbjct: 486 LINLRLRKNSLTERAFDDAFHG-----------RMKLKELDLRNNALSALPANLHQLSSLNTLLLSFNRLASLASVLWSKMAALSIVSIADNKLVDIGTIYEAPQLSSLSVENNNLQQIPPELGLC 600
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A0G2EFT8_9EURO (Putative leucine rich repeat domain-containing protein n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2EFT8_9EURO) HSP 1 Score: 55.8 bits (133), Expect = 1.870e-6 Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 97 LPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
LP+S ++R LDLSSN + +P S+ L++L L + L L + L A+ L L SNRLR L + + L RL+L +N+I P E TG
Sbjct: 429 LPVSATLRSLDLSSNLFAEIPESLACLTALRSLDLSNCMIESLHSLSRSPLPAVTVLKLRSNRLRSLAGIERLLSLERLDLSDNKITD-PEEAARLTG 525 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123820.1793.1 >prot_H-elongata_contig123820.1793.1 ID=prot_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp MSLERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSback to top mRNA from alignment at H-elongata_contig123820:78..869- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123820.1793.1 ID=mRNA_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig123820:78..869- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123820:78..869- >mRNA_H-elongata_contig123820.1793.1 ID=mRNA_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig123820:78..869- (Himanthalia elongata Himel1 dioecious)back to top |