mRNA_H-elongata_contig123811.1792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123811.1792.1
Unique NamemRNA_H-elongata_contig123811.1792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A7S2C9X7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9X7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.340e-15
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            +VCIGGGAGFIGSHLAKR+ ++GWYV+C DWK+NEFMQ
Sbjct:   21 RVCIGGGAGFIGSHLAKRMMSEGWYVICVDWKDNEFMQ 58
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BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A7S2CJC0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJC0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.440e-15
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFM 111
            KVCIGGGAGFIGSHLAKR+ A+GW+V+CADWK+NEFM
Sbjct:   33 KVCIGGGAGFIGSHLAKRMMAEGWHVICADWKDNEFM 69
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BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A812WUJ0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WUJ0_SYMMI)

HSP 1 Score: 73.2 bits (178), Expect = 2.750e-15
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            KVC+GGGAGFIGSH+AKRLK  G YVVCADWK+NEFM+
Sbjct:   24 KVCVGGGAGFIGSHIAKRLKEAGCYVVCADWKDNEFME 61
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BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: D8LR35_ECTSI (Nad-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR35_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.280e-15
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            KV IGGGAGFIGSHLAKRLK +GWYVVCADWK NEFM+
Sbjct:   37 KVFIGGGAGFIGSHLAKRLKGEGWYVVCADWKANEFME 74
[Close]
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A1E7FKD6_9STRA (Putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKD6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.470e-15
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQS 117
            KVC+GGGAGFIGSH+AKRLK  GWYV+C DWK NEFM++
Sbjct:   17 KVCVGGGAGFIGSHIAKRLKEAGWYVICVDWKTNEFMKN 55
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BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A7S3L783_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L783_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-14
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            KVC+GGGAGFIGSH+AKRLK +G+YV+C DWKENEFM+
Sbjct:   16 KVCVGGGAGFIGSHIAKRLKENGYYVICVDWKENEFMK 53
[Close]
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A1Z5JTK3_FISSO (GDP-D-mannose 3', 5'-epimerase n=2 Tax=Naviculales TaxID=38748 RepID=A0A1Z5JTK3_FISSO)

HSP 1 Score: 72.4 bits (176), Expect = 7.160e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            KVC+GGGAGFIGSH+AKRLKA G+YVV  DWKENEFM+
Sbjct:   13 KVCVGGGAGFIGSHIAKRLKAAGYYVVVVDWKENEFME 50
[Close]
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: K0TK28_THAOC (Epimerase domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TK28_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-13
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQSQ 120
            KVC+GGGAGFIGSH+AKRLK +G+ V   DWKENEFM+ +
Sbjct:   16 KVCVGGGAGFIGSHIAKRLKENGYRVTVVDWKENEFMKPE 55
[Close]
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A7R9WN58_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN58_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-13
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQSQ 120
            K C+GGGAGFIGSH+AKRLK  GWYV+  DWK+NEFM+ +
Sbjct:   17 KACVGGGAGFIGSHIAKRLKESGWYVIVVDWKKNEFMKEE 56
[Close]
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Match: A0A1Z5KPK9_FISSO (GDP-D-mannose 3', 5'-epimerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPK9_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 2.570e-13
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQ 114
            KVC+GGGAGFIGSH+AKRLK  G+YVV  DWKENEFM+
Sbjct:   13 KVCVGGGAGFIGSHIAKRLKTAGYYVVVVDWKENEFME 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123811.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2C9X7_9STRA2.340e-1578.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CJC0_9STRA2.440e-1583.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812WUJ0_SYMMI2.750e-1581.58Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
D8LR35_ECTSI4.280e-1586.84Nad-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A1E7FKD6_9STRA7.470e-1576.92Putative bifunctional dTDP-glucose 4,6-dehydratase... [more]
A0A7S3L783_9STRA1.070e-1478.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JTK3_FISSO7.160e-1481.58GDP-D-mannose 3', 5'-epimerase n=2 Tax=Naviculales... [more]
K0TK28_THAOC1.120e-1370.00Epimerase domain-containing protein (Fragment) n=1... [more]
A0A7R9WN58_9STRA1.380e-1370.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5KPK9_FISSO2.570e-1378.95GDP-D-mannose 3', 5'-epimerase n=1 Tax=Fistulifera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123811contigH-elongata_contig123811:577..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LR35
Preferred nameGME
KEGG rclassRC00289,RC00403,RC01780
KEGG koko:K10046
KEGG ReactionR00889,R07672,R07673
KEGG Pathwayko00053,ko00520,ko01100,ko01110,map00053,map00520,map01100,map01110
KEGG ModuleM00114
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016854,GO:0016857,GO:0019752,GO:0019852,GO:0019853,GO:0036094,GO:0042364,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0047918,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
EC5.1.3.18
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.153942-CDS-H-elongata_contig123811:576..6961622929729.153942-CDS-H-elongata_contig123811:576..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123811 577..696 +
1691679135.638223-CDS-H-elongata_contig123811:576..6961691679135.638223-CDS-H-elongata_contig123811:576..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123811 577..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123811.1792.1prot_H-elongata_contig123811.1792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123811 577..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123811.1792.1

>prot_H-elongata_contig123811.1792.1 ID=prot_H-elongata_contig123811.1792.1|Name=mRNA_H-elongata_contig123811.1792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
KVCIGGGAGFIGSHLAKRLKADGWYVVCADWKENEFMQSQ
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mRNA from alignment at H-elongata_contig123811:577..696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123811.1792.1 ID=mRNA_H-elongata_contig123811.1792.1|Name=mRNA_H-elongata_contig123811.1792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig123811:577..696+ (Himanthalia elongata Himel1 dioecious)
AAGGTTTGCATCGGTGGAGGCGCCGGTTTCATCGGTTCACATCTAGCCAA
GAGGCTCAAGGCAGATGGGTGGTACGTGGTGTGCGCCGACTGGAAAGAGA
ACGAGTTCATGCAGTCACAG
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Coding sequence (CDS) from alignment at H-elongata_contig123811:577..696+

>mRNA_H-elongata_contig123811.1792.1 ID=mRNA_H-elongata_contig123811.1792.1|Name=mRNA_H-elongata_contig123811.1792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig123811:577..696+ (Himanthalia elongata Himel1 dioecious)
AAGGTTTGCATCGGTGGAGGCGCCGGTTTCATCGGTTCACATCTAGCCAA
GAGGCTCAAGGCAGATGGGTGGTACGTGGTGTGCGCCGACTGGAAAGAGA
ACGAGTTCATGCAGTCACAGAAGGTTTGCATCGGTGGAGGCGCCGGTTTC
ATCGGTTCACATCTAGCCAAGAGGCTCAAGGCAGATGGGTGGTACGTGGT
GTGCGCCGACTGGAAAGAGAACGAGTTCATGCAGTCACAG
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